# Research

## People

Professor Emeritus
+972-48293407
Proteomics; Cancer Vaccines; Antigen Processing and Presentation; Big data of proteomics and peptidomics; Bioinformatics of proteomics and mass spectrometry.
Professor
+972-48294330
Distributed and Scalable Deep Learning; Deep Learning for Personal Medicine; Randomness in Deep Learning; Analytics of Rapid Data Streams; Complex Event Processing (CEP); Internet of Things and Smart Systems; Privacy Preserving; Cyber Security; Cloud Management
Professor
+972-48294425
Schema Matching; Entity Resolution; Semantic Integration of Data Resources; Business Process Management; Temporal Databases and Temporal Evolution of Databases.
Professor
+972-48294504
Service-Engineering of large operations (e.g. hospitals/emergency-departments, call/contact-centers, courts, …); Operations research; Statistics; Queueing science & theory; Control theory; Data- and process-mining.
Associate Professor
+972-778871939
We study fundamental epigenetics processes affecting gene expression and regulation by using bioinformatics, generating pipelines, and experimental biology.
Professor
+972-48294651
Computer Vision, Computer Graphics, Machine Learning, Visualization.
Associate Professor
+972-48293177
Enviromatics; machine learning methods and mathematical for natural complex environments; hydro-informatics; atmospheric-informatics; precise agriculture; structural health; smart infrastructure systems and connected transportation.
Associate Professor
+972-48295528
Enumeration of query results, probabilistic, incomplete and inconsistent databases, infrastructure for text analytics, databases for preferences and social choice, and database aspects of machine learning
Assistant Professor
Deep Learning, i.e., neural networks: understanding them theoretically (e.g., their implicit bias) and improving them (e.g., their resource efficiency and speed during training and inference).
Associate Professor
+972-48294134
Mechanobiology of cancer and wounds. Early-prognosis of cancer metastasis. Wound healing and prevention. Experiments, Finite element modeling, machine learning.
Assistant Professor
+972-48294371
Optimal designs for clinical trials, Regression, Semi-supervised learning, Statistical theory.
Associate Professor
+972-48295349
Recording nerve cells in the brain during tasks of learning and memory, using tetrodes and micro-electrodes. Recording of nerve-cell populations during behavior. New techniques for recording of multiple nerve cells in awake behaving animals.
Professor
+972-48294409
Conceptual Modeling, Systems Eng. and Modeling, Systems Architecture, Enterprise Systems Modeling; Object-Process Methodology; Ontologies; Software Development Methodologies, Semantic Web; Systems Biology, Robotics.
Associate Professor
+972-48294952
Information and coding theory with applications to non-volatile memories, associative memories, data storage and retrieval, distributed storage, privacy, and DNA storage.
Assistant Professor
+972-48292034
Automated Planning, Robotics, Artificial Intelligence.
Professor
Establishing and analyzing large-scale clinical and biological/genetic bio-banks and databases to study disease etiology and clinical behavior, especially with regards to malignancies.
Assistant Professor
+972-778871321
Caching, Content Distribution, Optimizations for Flash Based Storage, Erasure Coding, Deduplication, Workload Characterization and Improved Analysis Tools.
Assistant Professor
+972-48294510
Service Engineering/Service Operations; Behavioral Operations; Queueing Networks and Approximations; Healthcare and Call-center Operational Design.
Assistant Professor
+972-48294653
Image processing and computer vision, with strong focus on mathematical models related to calculus of variations and nonlinear spectral theory.
Assistant Professor
+972-48295239
Nano and micro-fabricated surfaces for cell biology research; Mechanobiology of Cells.
Professor
+972-48293087
Nano-array devices for screening, diagnosis and monitoring of disease, nanomaterial-based chemical (flexible) sensors, electronic skin, breath analysis, volatile biomarkers, and cell-to-cell communication.
Professor
+972-48294649
Distributed and network-based computing, Distributed Storage, Parallel Computing, Blockchains.
Assistant Professor
+972-48292051
Implications of quantum mechanics on future technology; Algorithms to automate research in fundamental science and in mathematics; Fundamentals of light-matter interactions; Probing materials with ultrafast electrons and photons.
Assistant Professor
+972-48294935
Algorithmic game theory; Theory of computation; Optimization; AI; Internet economics; Market design; Auctions.
Professor
+972-48295738
Using machine learning in datacenter networks and high-performance routers, e.g., for congestion control, flow classification, and buffer management.
Professor
+972-48294731
InterArray processing, signal processing, deep learning, analysis and modeling of acoustic signals, speech enhancement, noise estimation, source localization, blind source separation, system identification and adaptive filtering.
Assistant Professor
+972-4829040
Genomics and epigenetics and cardiac imaging.
Assistant Professor
+972-48294125
The Artificial Intelligence in Medicine Laboratory (AIMLab.) researches innovative pattern recognition algorithms to exploit the information encrypted within large datasets of physiological time series.
Lecturer
Data Science Methods: Spectral Total Variation Techniques; Biomedical Engineering: PET/CT and SPECT/CT data fusion, characterization, quantitation, artifact removal, optimization of clinical imaging protocols.
Associate Professor
+972-48294060
Accessibility, mobility, travel problems, disparities, social exclusion, equity.
Assistant Professor
+972-778875332
Computational Cancer Genomics; Our lab addresses emerging challenges in computational cancer genomics by developing and applying computational methods for cancer data analysis.
Assistant Professor
+972-48294749
Machine Learning and Optimization.
Associate Professor
+972-48294298
Machine learning for material design.
Professor
+972-48294169
Data models; Sparse Representations – Theory and Practice and their Connection to Deep-Learning; Inverse Problems in Signal and Image Processing; Image Denoising; Graph-Based Signal Processing; Patch-Based Image Processing; Super-Resolution
Professor
+972-48294331
Image analysis, statistical analysis of visual tasks, and the application of deep learning to vision tasks.
Associate Professor
+972-48293378
Modeling and understanding the geometry of shapes, differential geometry, architectural geometry, remeshing for fabrication, numerical optimization and harmonic analysis, animation, fluid simulation.
Associate Professor
+972-48293883
Science and engineering education; 21st century skills with an emphasis on innovative, critical, and flexible thinking; Project-based learning; Motivation to learn; Massive open online course (MOOC); Ethics of research.
Associate Professor
+972-778872092
Control policies that facilitates learning and sim2real transfer with applications to robot assembly and legged locomotion; Invasive and non-invasive Brain Machine Interfaces (BMIs) and error related processing;
Professor
+972-48294734
Markov Decision Processes and Stochastic Control; Reinforcement Learning; Online Learning and Bandit Processes; Game Theoretic Analysis of Queueing Systems; Trajectory Optimization; Cooperative Mission Planning.
Professor
+972-48295232
The Lab focuses on T cell immunology in the interface between cancer and autoimmunity, with a particular interest in chemokine-chemokine receptor interactions. The lab develops unique strategies for cancer immunotherapies and for restraining autoimmunity.
Associate Professor
+972-48294842
Machine Learning and Statistics, Combinatorial Optimization and Approximation Algorithms, Algorithmic Dimension Reduction and Applications, Complexity.
Assistant Professor
Modeling and predicting human behavior and social dynamics; Learning to support human decision-making; Training for human objectives and with humans in the loop; Implications of deploying predictive models in social contexts.
Assistant Professor
information theory, probability and statistics in high dimension, nonparametric regression, large deviations bounds, analysis of Boolean functions.
Assistant Professor
+972-48295293
Research intereWe combine experimental and computational methods to gain a mechanistic understanding of how the genome encodes its organization and how this organization conveys biological function.
Assistant Professor
+972-48294412
Artificial Intelligence; Human-Computer Interaction; Intelligent User Interfaces; Explainable AI.
Assistant Professor
+9724-8294041
Building physics; Building performance simulation; Bioclimatic design; Urban microclimate; Building technology; History of architecture and architectural technology; Urban history; Digital Humanities.
Professor
+972-48293107
Cognitive and social processes of computer science, software engineering and data science education, on the individual, the team and the organization levels, in all kinds of organizations.
Associate Professor
+972-547558378
When facing challenging tasks in computerized and daily tasks, people must engage in mental effort management. Professor Ackerman studies factors that drive cognitive biases and waste of thinking time.
Associate Professor
+972-48294422
Game theory, Economic theory, Privacy.
Associate Professor
+972-48294503
Out-of-distribution generalization in NLP (e.g. cross-language and cross-domain learning); NLP for social, behavioral and health science; Causality and model interpretation.
Professor
+972-48294616
Computer vision, graphics, Geometric machine learning and big data, computational medicine and biometry, applied metric and differential geometries.
Professor
+972-48294658
Information processing, learning and control in natural and artificial systems, reinforcement learning, lifelong learning, multi agent learning, the perception action cycle.
Associate Professor
+972-48294750
Geometry-based Data Analysis & Modeling; Signal Processing; Applied Harmonic Analysis; Diffusion Geometry; Biomedical Signal Processing; Computational Neuroscience.
Assistant Professor
+972-48295991
Geodata science, methods of interpretation, mining, and integration of crowdsourced content to augment and develop location-based services and smart mapping infrastructures. Spatial-cognition, navigation, and the built-environment.
Associate Professor
+972-778871502
Performing logic using memory cells to build the memristive memory processing unit (mMPU), mixed-signal circuits, RF circuits, neuromorphic computing, cytomorphic systems, deep learning accelerators, internet-of-things, and hardware security.
Professor
+972-48294346
Artificial Intelligence, Machine Learning, Natural Language Semantics, Anytime Learning, Active and Selective Learning, Information retrieval, Multi-agent Systems, Adversary search, Opponent Modeling, Resource-bounded reasoning, Cost-sensitive Learning.
Assistant Professor
972-48294437
Robust and adaptive optimization; Data-driven optimization; Algorithms for nonconvex and mixed-integer optimization; Optimization applications in: energy, inventory systems, estimation and control, statistics and healthcare.
Professor
+972-48294416
Algebraic and Geometric Methods for Discrete Optimization.
Associate Professor
+972-48294442
Continuous Optimization: Theory and Algorithms, development and analysis of Optimization Methods for large-scale optimization problems, Applications of Optimization Methods in Machine/Deep Learning.
Assistant Professor
+972-48294414
Theoretical & practical aspects of machine learning. Mathematical solutions to real-life problems demonstrating non-traditional statistical behavior.
Associate Professor
+972-48294756
Computer Vision; Machine Learning; Image Processing; Signal Processing.
Professor
+972-48293080
Transportation systems modeling and analysis, traffic simulation modeling, driving and travel behavior, intelligent transportation systems, traffic management and control.
Assistant Professor
+972-48292165
Relating brain functional / structural patterns to children’s abilities (reading, language, memory, attention). Modeling physiological datasets (speech, heart rate, eye-movement, brain markers etc) for intervention and diagnostic tools.
Assistant Professor
+972-48294440
Machine learning; causal inference; machine learning for healthcare; deep learning.
Associate Professor
+972-48293815
The intersection of probabilistic perception and inference, learning, and planning under uncertainty, both for single and distributed multi-agent autonomous systems.
Associate Professor
Survival analysis, Empirical processes, Machine learning, Semiparametric models.
Assistant Professor
+972-48294959
Research centers around the theory and practice of statistical inference and machine learning, focusing on the reliability, robustness, and interpretability of modern data-driven algorithms.
Yoav Shechtman
Assistant Professor
+972-48291422
Computational imaging, fluorescence microscopy, cellular imaging, 3D imaging, super-resolution microscopy, wavefront shaping
Assistant Professor
+97248294958
Natural language processing; machine learning for language understanding and generation; neural network representations; interpretability and robustness of machine learning models.
Associate Professor
+972-48294642
Storage devices, systems; Reliable data distribution in networks; Coding theory, Data compression.

## Projects

Nonsmooth bilevel optimization using first-order methods
Bilevel optimization problems arise in many ML and signal processing applications, where the aim is to find the minimal norm or most sparse optimal solution of an underdetermined optimization problem. Traditionally, these problems have been solved by regularization which requires tuning of the regularization parameter. We are fo... more

## Nonsmooth bilevel optimization using first-order methods

Bilevel optimization problems arise in many ML and signal processing applications, where the aim is to find the minimal norm or most sparse optimal solution of an underdetermined optimization problem. Traditionally, these problems have been solved by regularization which requires tuning of the regularization parameter. We are focus on an alternative approach which utilizes first order optimization methods to directly solve this problem, for which we provide rate of convergence guarantees.

Adaptive planning radiotherapy treatment based on inaccurate and evolving bio-marker information collected from imaging during the treatment. Radiotherapy plan is composed on the amount and angle of radiation in each stage of the treatment, where the goal is to get the maximal dose to the tumor while protecting healthy organs. T... more

Adaptive planning radiotherapy treatment based on inaccurate and evolving bio-marker information collected from imaging during the treatment. Radiotherapy plan is composed on the amount and angle of radiation in each stage of the treatment, where the goal is to get the maximal dose to the tumor while protecting healthy organs. The challenge comes from the resulting problem being a large-scale mixed integer problem, and the dependence between optimal decision and the future bio-marker levels.

Data-driven multi-stage Stochastic Optimization
Multi-stage linear stochastic optimization problems are known to be challenging. An added difficulty arises when the distribution of the uncertainty is not known exactly, and alternatively only historical sample paths of the problem are available.  We explore solving this problem by using data-driven distributionally robust opt... more

## Data-driven multi-stage Stochastic Optimization

Multi-stage linear stochastic optimization problems are known to be challenging. An added difficulty arises when the distribution of the uncertainty is not known exactly, and alternatively only historical sample paths of the problem are available.  We explore solving this problem by using data-driven distributionally robust optimization, for which we provide convergence guarantees. Additionally, we explore solving the resulting optimization problem by approximation methods.

Recommendation: a dynamical-systems perspective
Modern recommendation platforms have become complex, dynamic eco-systems. Platforms often rely on machine learning models to successfully match users to content, but most methods neglect to account for how they affect user behavior, satisfaction, and well-being of over time. Here we propose a novel dynamical-systems perspective ... more

## Recommendation: a dynamical-systems perspective

Modern recommendation platforms have become complex, dynamic eco-systems. Platforms often rely on machine learning models to successfully match users to content, but most methods neglect to account for how they affect user behavior, satisfaction, and well-being of over time. Here we propose a novel dynamical-systems perspective to recommendation that allows to reason about, and control, macro-temporal aspects of recommendation policies as they relate to user behavior.

Learning Representations by Humans, for Humans
The task of optimizing machines to support human decision-making is often conflated with that of optimizing machines for accuracy, even though they are materially different. Whereas typical learning systems prescribe actions through prediction, our framework learns to to reframe problems in a way that directly supports human dec... more

## Learning Representations by Humans, for Humans

The task of optimizing machines to support human decision-making is often conflated with that of optimizing machines for accuracy, even though they are materially different. Whereas typical learning systems prescribe actions through prediction, our framework learns to to reframe problems in a way that directly supports human decisions. Using a novel human-in-the-loop training procedure, our framework learns problem representations that directly optimize human performance.

Machine learning has become imperative for informing decisions that affect the lives of humans across a multitude of domains. But when people benefit from certain predictive outcomes, they are prone to act strategically to improve those outcomes. Our goal in this project is to develop a practical learning framework that accounts... more

Machine learning has become imperative for informing decisions that affect the lives of humans across a multitude of domains. But when people benefit from certain predictive outcomes, they are prone to act strategically to improve those outcomes. Our goal in this project is to develop a practical learning framework that accounts for how humans behaviourally respond to classification rules. Our framework provides robustness while also providing means to promote favourable social outcomes.

Machine learning tools for missing and censored data
When using machine learning algorithms, it is often assumed that the data is complete.  In real-life applications, however, this assumption is usually over-optimistic. "Missingness" can happen in many ways: some missing covariates, some missing responses, only a lower bound is given for the response (i.e., the response is right... more

## Machine learning tools for missing and censored data

When using machine learning algorithms, it is often assumed that the data is complete.  In real-life applications, however, this assumption is usually over-optimistic. “Missingness” can happen in many ways: some missing covariates, some missing responses, only a lower bound is given for the response (i.e., the response is right censored), observations are seen only if they crossed some level (i.e., left truncation), or a label is given only to a bag of observations. We develop machine learning tools that can handle missing data, using imputation, inverse probability weighting, and doubly-robust estimators.

Measuring uncertainty of machine learning predictions
Data scientists are interested in answering questions such as how confident one is in a prediction, and whether a certain feature has a significant influence on the response variable. Drawing statistical inference for machine learning algorithms is difficult. We study methods for performing statistical inference for two common m... more

## Measuring uncertainty of machine learning predictions

Data scientists are interested in answering questions such as how confident one is in a prediction, and whether a certain feature has a significant influence on the response variable. Drawing statistical inference for machine learning algorithms is difficult. We study methods for performing statistical inference for two common machine learning techniques: kernel machines and deep learning. We utilize Bayesian methods to quantify uncertainty, select hyper-parameter values, and to bound the generalization error. We propose novel PAC-Bayes generalization bounds which can be data-dependent.

Fighting COVID-19 by learning from data
To help policymakers set policy based on scientific methods, we use mathematical modeling and advanced statistical tools to study different aspects of the COVID-19 pandemic. Our research includes learning the susceptibility and infectivity of children and adolescents; the protection of vaccination and previous SARS-CoV-2 infecti... more

## Fighting COVID-19 by learning from data

To help policymakers set policy based on scientific methods, we use mathematical modeling and advanced statistical tools to study different aspects of the COVID-19 pandemic. Our research includes learning the susceptibility and infectivity of children and adolescents; the protection of vaccination and previous SARS-CoV-2 infection in preventing subsequent SARS-CoV-2 infection and other COVID-19 outcomes; and the effect of COVID-19 on different aspects of public health, such as suicide rate and natural abortion.

Redundant Storage Service on the Edge
This project will enable unreliable edge computing nodes to jointly provide a reliable storage service for unpredictable user workloads. Edge systems consists small-scale servers (nodes) at the edge of the network whose root is in the cloud-based datacenter. Their premise is to bring data and computing closer to time-critical ap... more

## Redundant Storage Service on the Edge

This project will enable unreliable edge computing nodes to jointly provide a reliable storage service for unpredictable user workloads. Edge systems consists small-scale servers (nodes) at the edge of the network whose root is in the cloud-based datacenter. Their premise is to bring data and computing closer to time-critical applications running on e.g., cellphones and autonomous vehicles. We combine storage redundancy schemes with scalable algorithms for object mapping and request scheduling.

Non-invasive Brain-Computer Interfaces
Non-invasive brain computer interfaces (BCIs) provide direct communication link from the brain to external devices. We develop non-invasive BCIs that are based on interpreting EEG measurements to identify user’s desired selection, action or movement. We focus on developing self- correction capabilities, based on error-related ... more

## Non-invasive Brain-Computer Interfaces

Non-invasive brain computer interfaces (BCIs) provide direct communication link from the brain to external devices. We develop non-invasive BCIs that are based on interpreting EEG measurements to identify user’s desired selection, action or movement. We focus on developing self- correction capabilities, based on error-related potentials (ErrPs), which are evoked in the brain when errors are detected.  We investigate ErrPs, develop classifiers for detecting them and methods to integrate them to improve BCIs. This project is funded by Dr. Maria Ascoli Rossi Research Grant.

Invasive Brain-Machine Interfaces
Invasive Brain-Machine Interfaces (BMIs) provide direct communication link from the brain to external devices. Invasive BMIs are based on interpreting neural activity recorded with invasive electrodes, identifying desired movements and controlling external devices accordingly. We develop algorithms to identify error-related proc... more

## Invasive Brain-Machine Interfaces

Invasive Brain-Machine Interfaces (BMIs) provide direct communication link from the brain to external devices. Invasive BMIs are based on interpreting neural activity recorded with invasive electrodes, identifying desired movements and controlling external devices accordingly. We develop algorithms to identify error-related processing in the neural activity and to correct the BMIs accordingly. This project is performed in collaboration with Chestek’s Lab at the University of Michigan and funded by Betty and Dan Kahn Foundation.

Reinforcement learning of assembly policies
Our research focuses on developing control policies that are based on admittance control to facilitate learning and sim2real. This is part of a Large project on Assembly by Robotic Technology (ART) funded by the Israel Innovation Authority. We developed a Residual Admittance Policy (RAP) that generalizes well over space, size an... more

## Reinforcement learning of assembly policies

Our research focuses on developing control policies that are based on admittance control to facilitate learning and sim2real. This is part of a Large project on Assembly by Robotic Technology (ART) funded by the Israel Innovation Authority. We developed a Residual Admittance Policy (RAP) that generalizes well over space, size and shape, and facilitates quick transfer learning. Most impressively, we demonstrate that the policy learned in simulations is highly successful in controlling an industrial robot (UR5e) to insert pegs of different shapes and sizes, without further training.

Development of agonistic compounds for therapy of inflammatory autoimmunity
The activity of autoimmune T cells is tightly regulated by two major types of regulatory T. cells, those that primarily express the fork-head gene FOXP3 (FOXp3+ regulatory T cells, also named T regs) , and those that do not (T regulatory-1 cells, also named Tr1). We have developed agonists that potentiate each sub-type and could... more

## Development of agonistic compounds for therapy of inflammatory autoimmunity

The activity of autoimmune T cells is tightly regulated by two major types of regulatory T. cells, those that primarily express the fork-head gene FOXP3 (FOXp3+ regulatory T cells, also named T regs) , and those that do not (T regulatory-1 cells, also named Tr1). We have developed agonists that potentiate each sub-type and could be used for therapy of different autoimmune diseases.

Novel stabilized CXCL9/CXCL10 compounds for cancer immunotherapy
Long ago we reported that the CXCR3 ligands CXCL10 and possibly CXCL9  potentiate effector T cells and therefore their stabilized form could be used for cancer immunotherapy. It appears that due to post transcriptional modifications (PTM)  these compounds are rapidly inactivated at the tumor site. We have developed unique comp... more

## Novel stabilized CXCL9/CXCL10 compounds for cancer immunotherapy

Long ago we reported that the CXCR3 ligands CXCL10 and possibly CXCL9  potentiate effector T cells and therefore their stabilized form could be used for cancer immunotherapy. It appears that due to post transcriptional modifications (PTM)  these compounds are rapidly inactivated at the tumor site. We have developed unique compounds that are resistant  to these PTM that can effectively be used for cancer immunotherapy

Online Variance Reduction for Stochastic Optimization
Modern stochastic optimization methods often rely on uniform sampling which is agnostic to the underlying characteristics of the data. This might degrade the convergence by yielding estimates that suffer from a high variance. A possible remedy is to employ non-uniform importance sampling techniques, which take the structure of t... more

## Online Variance Reduction for Stochastic Optimization

Modern stochastic optimization methods often rely on uniform sampling which is agnostic to the underlying characteristics of the data. This might degrade the convergence by yielding estimates that suffer from a high variance. A possible remedy is to employ non-uniform importance sampling techniques, which take the structure of the dataset into account. In this work, we investigate a recently proposed setting which poses variance reduction as an online optimization problem with bandit feedback. We devise a novel and efficient algorithm for this setting that finds a sequence of importance sampling distributions competitive with the best fixed distribution in hindsight, the first result of this kind. While we present our method for sampling data points, it naturally extends to selecting coordinates or even blocks of thereof. Empirical validations underline the benefits of our method in several settings.

We are using ideas inspired by causal inference to address a difficult problem in machine learning: unsupervised domain adaptation. For example, we wish to train on data from one hospital and succeed on other, unseen hospitals; or train on images from one setting and test on images from many different settings.
People:
Uri Shalit
Fusing mechanistic and data-driven models
We are building theoretical and practical models that take as input both a mechanistic world model (for example and ordinary differential equation describing the cardio-vascular system) and data (for example ICU patient vital signs). The goal is to get the best of both worlds: the robustness, interpretability, and causal groundi... more

## Fusing mechanistic and data-driven models

We are building theoretical and practical models that take as input both a mechanistic world model (for example and ordinary differential equation describing the cardio-vascular system) and data (for example ICU patient vital signs). The goal is to get the best of both worlds: the robustness, interpretability, and causal grounding of mechanistic models, together with the flexibility of black-box deep learning models.

People:
Uri Shalit
Individual-level causal inference for health outcomes
In collaboration with health providers such as Clalit Health Services and Rambam Health Campus we are developing individual-level causal inference tools that will give accurate and safe treatment recommendations to patients.
People:
Uri Shalit
Charge transport through heterojunctions
Charge transport formulation is developed for evaluating electronic conductivity across triple material junctions.
Identifying travel problems based on big data
Big data sources have been used extensively to analyze people’s travel patterns. This project breaks new ground by using big data on travel patterns to identify the incidence and severity of travel problems – defined here as any difficulty a person may experience in reaching desired destinations. Relying on a large-scale app... more

## Identifying travel problems based on big data

Big data sources have been used extensively to analyze people’s travel patterns. This project breaks new ground by using big data on travel patterns to identify the incidence and severity of travel problems – defined here as any difficulty a person may experience in reaching desired destinations. Relying on a large-scale app-based mobility survey, data will be extracted on individual’s trip rates, travel horizons, trip speeds, and more, with the aim to detect individuals particularly likely to experience severe travel problems.

Studying response to immunotherapy via single-cell data
Immunotherapy has revolutionized cancer therapy, leading to the 2018 Nobel Prize in Physiology and Medicine. However, despite the dramatic response observed in several cancer types, many patients do not benefit from this treatment or relapse in a relatively short time. To improve our understanding of patient response we utilize ... more

## Studying response to immunotherapy via single-cell data

Immunotherapy has revolutionized cancer therapy, leading to the 2018 Nobel Prize in Physiology and Medicine. However, despite the dramatic response observed in several cancer types, many patients do not benefit from this treatment or relapse in a relatively short time. To improve our understanding of patient response we utilize single-cell RNA-seq data to characterize the tumor’s microenvironment, identify biomarkers of response and predict novel drug targets.

Studying tumor-immune metabolic interactions
The use of immunotherapy for solid tumors has expanded dramatically with the development of checkpoint blockade therapy. Despite the unprecedented responses observed in different tumor types, many patients are refractory to therapy or acquire resistance. Growing evidence shows that the metabolic requirements of immune cells in t... more

## Studying tumor-immune metabolic interactions

The use of immunotherapy for solid tumors has expanded dramatically with the development of checkpoint blockade therapy. Despite the unprecedented responses observed in different tumor types, many patients are refractory to therapy or acquire resistance. Growing evidence shows that the metabolic requirements of immune cells in the tumor microenvironment greatly influence the success of therapy. Here we use genomic and metabolic modeling analysis to reveal the metabolic dependencies between tumor and immune cells and identify perturbations that can increase immune activity.

Studying resistance to PARPi in pancreatic cancer
Pancreatic cancer is the most aggressive form of human malignancies, with only 6% 5-year survival rate. Recently, it was found that a subgroup of patients carry mutations in the homologous recombination (HR) genes BRCA1 or BRCA2 and these tumors are sensitive to PARP inhibitor. However, response rates are infrequent and the subs... more

## Studying resistance to PARPi in pancreatic cancer

Pancreatic cancer is the most aggressive form of human malignancies, with only 6% 5-year survival rate. Recently, it was found that a subgroup of patients carry mutations in the homologous recombination (HR) genes BRCA1 or BRCA2 and these tumors are sensitive to PARP inhibitor. However, response rates are infrequent and the subset of patients suitable for the treatment is limited. Here we use genomic data to computationally identify molecular signatures of response to be used as biomarkers, and aim to increase the number of patients that can benefit from the treatment.

In this project we developed and validated of a new sentiment analysis engine for conversational data, called CustSent, in collaboration with LivePerson Inc.. We then develop the novel concept of emotional load - the load that employees must bear due to the emotional strain inherent in the service interactions in which they enga... more

In this project we developed and validated of a new sentiment analysis engine for conversational data, called CustSent, in collaboration with LivePerson Inc.. We then develop the novel concept of emotional load – the load that employees must bear due to the emotional strain inherent in the service interactions in which they engage. Using contact center data we investigate the impact of Emotional Load on agents and the progression of the service interaction.

Information Transparency in Emergency Departments
We investigate how the transparency of the medical process and wait time information influence ED patients. In collaboration with Clalit Health Services, we developed a web-based app that delivers information to ED patients through their mobile phones. The development combines methods of process mining, queueing theory, and huma... more

## Information Transparency in Emergency Departments

We investigate how the transparency of the medical process and wait time information influence ED patients. In collaboration with Clalit Health Services, we developed a web-based app that delivers information to ED patients through their mobile phones. The development combines methods of process mining, queueing theory, and human-centered UX design. The system operates at Carmel Medical Center. Our research examines the impact of information transparency on ED efficiency and patient behavior.

Contact Center Operations
Contact centers (CS) are considered the future of service delivery, offering service via texting, social media, and apps. These provide companies with unique opportunities, such as providing service proactively only to the customers that need it the most, but are also prone to new operational challenges, such as concurrency mana... more

## Contact Center Operations

Contact centers (CS) are considered the future of service delivery, offering service via texting, social media, and apps. These provide companies with unique opportunities, such as providing service proactively only to the customers that need it the most, but are also prone to new operational challenges, such as concurrency management and information uncertainty. CS data allow us to investigate the dynamics of service production and the behaviors of customers and agents. In a series of projects, we create new service models for CS and control policies for those systems.

Energy consumption and visual comfort in buildings
he aim of the project is to develop a new methodology for deciphering the human factor in illuminance-related building operation by taking advantage of recent developments in commercial building automation systems and the increasing prevalence of digital control systems for shading operation. The project involves the analysis of... more

## Energy consumption and visual comfort in buildings

he aim of the project is to develop a new methodology for deciphering the human factor in illuminance-related building operation by taking advantage of recent developments in commercial building automation systems and the increasing prevalence of digital control systems for shading operation. The project involves the analysis of a large-scale dataset of long-term roller blinds operation in a multi-story office building in Tel Aviv, reflecting user preferences on indoor lighting conditions.

Development of an integral microclimatic analysis tool
The aim of the project is to address an existing gap in the evaluation and modelling of urban microclimates, their effects on human thermal stress and perception, and the application of scientific data in urban planning processes. This is achieved through the creation of a single computational data collection and analysis platfo... more

## Development of an integral microclimatic analysis tool

The aim of the project is to address an existing gap in the evaluation and modelling of urban microclimates, their effects on human thermal stress and perception, and the application of scientific data in urban planning processes. This is achieved through the creation of a single computational data collection and analysis platform that integrates biophysical comfort indices and urban-scale physical, climatic, and pedestrian mapping.

(led by Prof. David Pearlmutter, Ben Gurion University of the Negev)

The aim of the project is to develop a new methodology for evaluating microclimatic summer conditions across an entire city, focusing on the provision of outdoor shade as a primary comfort indicator. Based on high-resolution 2.5D mapping of buildings, ground, and tree canopies, we employ detailed calculation of solar exposure at... more

The aim of the project is to develop a new methodology for evaluating microclimatic summer conditions across an entire city, focusing on the provision of outdoor shade as a primary comfort indicator. Based on high-resolution 2.5D mapping of buildings, ground, and tree canopies, we employ detailed calculation of solar exposure at street level and propose the use of a summer Shade Index as a quantifiable factor for revealing a city’s hierarchy of microclimatic qualities.

Dynamic Database Embeddings with FoRWaRD
We study the problem of computing embeddings tuples of a relational database in a manner that is extensible to dynamic changes of the database. Importantly, the embedding of existing tuples should not change due to the embedding of newly inserted tuples (as database applications might rely on existing embeddings), while the embe... more

## Dynamic Database Embeddings with FoRWaRD

We study the problem of computing embeddings tuples of a relational database in a manner that is extensible to dynamic changes of the database. Importantly, the embedding of existing tuples should not change due to the embedding of newly inserted tuples (as database applications might rely on existing embeddings), while the embedding of all tuples, old and new, should retain high quality. Our preliminary solutions show promising results relative to the alternatives, consistently and often considerably.

Properties of Inconsistency Measures for Databases
How should we quantify the amount of inconsistency in the database? Proper inconsistency measures are important for various tasks, such as progress indication and action prioritization in data cleaning, and reliability estimation for datasets. We investigate a collection of basic measures in both the Knowledge Representation ... more

## Properties of Inconsistency Measures for Databases

How should we quantify the amount of inconsistency in the database?

Proper inconsistency measures are important for various tasks, such as progress indication and action prioritization in data cleaning, and reliability estimation for datasets. We investigate a collection of basic measures in both the Knowledge Representation and Database communities, analyze their theoretical properties, and empirically observe their behavior in an experimental study. We demonstrate how the framework can lead to new inconsistency measures by introducing a new measure that satisfies all of the properties we consider and can be computed efficiently.

The Importance of Literacy in Young Children
In the study, we examine the language development among toddlers aged 2-3.5-years-old and the brain synchronization between the mother and the child using EEG, while performing various activities around stories reading and listening.
The Role of Executive Functions in Hebrew-Speaking Children
We examine the role of executive functions in reading in children aged 8-12 using an adaptive intervention program developed in our lab. We use neuroimaging tools such as functional and structural MRI as well as EEG to define patterns that may predict a better gain from intervention.
Cardiac Imaging
We are using echocardiography (ultrasound) to study the function of the heart in mice, rat and in patients.
Genomics and epigenetics
We map the chromatin in cells using high throughput sequencing approaches such as ATAC-seq, ChiP-seq and single cell sequencing. We are using CRISPR based functional assays to understand and identify regulatory elements.
Intelligent systems for supporting student learning
We are interested in developing intelligent systems that support students' learning. One project develops "invention activities" for students learning data science, supported by automatic feedback mechanisms. This approach aims to facilitate improved understanding of data science concepts by letting students invent and test quan... more

## Intelligent systems for supporting student learning

We are interested in developing intelligent systems that support students’ learning. One project develops “invention activities” for students learning data science, supported by automatic feedback mechanisms. This approach aims to facilitate improved understanding of data science concepts by letting students invent and test quantitative measures. In a second project, we are developing an intelligent system for supporting student collaboration on joint project. We are designing algorithms for analyzing students’ and design interfaces that will provide collaborators with actionable information regarding the group’s progress.

People:
Ofra Amir
Explainable Reinforcement Learning
Understanding the capabilities and limitations of agents is important for users, as they need to choose between different agents, adjust the level of autonomy of an agent, or work alongside an agent. While prior work in explainable AI has developed methods for explaining individual decisions of an agent to a person retrospective... more

## Explainable Reinforcement Learning

Understanding the capabilities and limitations of agents is important for users, as they need to choose between different agents, adjust the level of autonomy of an agent, or work alongside an agent. While prior work in explainable AI has developed methods for explaining individual decisions of an agent to a person retrospectively, these approaches do not provide users with a global understanding of an agent’s expected behavior in a range of situations. We are developing explanation methods for reinforcement learning agents.

People:
Ofra Amir
Precise Agriculture
Precision agriculture (PA) concept is based on observing, measuring and responding to inter and intra-field variability in crops or livestock. The goal is to facilitate a decision support system (DSS) for whole farm management with the goal of optimizing returns on inputs while preserving resources. Among these many approaches w... more

## Precise Agriculture

Precision agriculture (PA) concept is based on observing, measuring and responding to inter and intra-field variability in crops or livestock. The goal is to facilitate a decision support system (DSS) for whole farm management with the goal of optimizing returns on inputs while preserving resources. Among these many approaches we focus on three specific applications: precise irrigation, early crops disease detection and early detection of pain in dairy cows.

Hydro-Informatics
This research consists of development and validation of effective, reliable and applicable algorithms for early detection (ED) of contaminations in drinking water (DW) from one or more sources, using data from WQ sensors. Specifically, anomaly detection in UV-absorbance spectra as means for contamination detection is presented. ... more

## Hydro-Informatics

This research consists of development and validation of effective, reliable and applicable algorithms for early detection (ED) of contaminations in drinking water (DW) from one or more sources, using data from WQ sensors. Specifically, anomaly detection in UV-absorbance spectra as means for contamination detection is presented. An additional ED algorithm, has also been developed, utilizing WQ measurements of standard physicochemical parameters. The algorithm’s high performance, together with its simplicity, adjustability, ease of implementation and low computational complexity – make it a valuable addition to water monitoring systems. Testing the performance of the two ED algorithms showed that processing physicochemical WQ measurements to detect anomalies, can serve as effective EDSs’ for DW contaminations.

Atmospheric Informatics
Recent developments in sensory and communication technologies have made low-cost, micro-sensing units (MSUs) feasible. These MSUs can operate as a set of individual nodes, or may be interconnected to form a Wireless Distributed Environmental Sensor Network (WDESN). MSU’s lower power consumption and small size enable many new a... more

## Atmospheric Informatics

Recent developments in sensory and communication technologies have made low-cost, micro-sensing units (MSUs) feasible. These MSUs can operate as a set of individual nodes, or may be interconnected to form a Wireless Distributed Environmental Sensor Network (WDESN). MSU’s lower power consumption and small size enable many new applications, such as mobile sensing. MSUs’ main limitation is their relatively low accuracy, with respect to laboratory equipment or an AQM station. In this project we examine algorithms for assessing these sensors in field operations, as well as autonomous calibration and error concealment, optimal placement of the sensors and the utilization of the mobile sensors in the process, and advanced algorithms for data analysis provide a comprehensive toolset for atmospheric data analysis.

Collaborative Top-K Queries with Uncertain Scores
The research overarching goal is to investigate recommendation tasks from a probabilistic perspective. We aim to confront directly with the data uncertainty as part of the recommendation process and to propose new probabilistic ranking techniques for various recommendation tasks. We look for new semantics, evaluation measures an... more

## Collaborative Top-K Queries with Uncertain Scores

The research overarching goal is to investigate recommendation tasks from a probabilistic perspective. We aim to confront directly with the data uncertainty as part of the recommendation process and to propose new probabilistic ranking techniques for various recommendation tasks. We look for new semantics, evaluation measures and efficient processing methods suitable to various recommendation tasks, towards designing general framework for generating high-quality recommendation.

Goal Recognition Design
Goal recognition design is a problem, in which we take a domain theory and a set of goals and ask: 1) to what extent do the actions performed by an agent within the model reveal its objective, and 2) what is the best way to modify a model so that any agent acting in the model reveals its objective early on. As a first stage, Go... more

## Goal Recognition Design

Goal recognition design is a problem, in which we take a domain theory and a set of goals and ask:
1) to what extent do the actions performed by an agent within the model reveal its objective, and 2) what is the best way to modify a model so that any agent acting in the model reveals its objective early on. As a first stage, Goal Recognition Design finds the Worst Case Distinctiveness (wcd) of a model and as a second stage, after finding the wcd of a model, we aim at minimizing it.

Dechiphering hippocampal calcium imaging activity during behavior
It is known that the hippocampus contain place cells, responsible for coding the position of the animal in the environment. We record of data of hundreds of cells simultaneously using calcium imaging in freely foraging mice, and thus we have an opportunity to analyze the network properties and dynamics of hippocampal place cells... more

## Dechiphering hippocampal calcium imaging activity during behavior

It is known that the hippocampus contain place cells, responsible for coding the position of the animal in the environment. We record of data of hundreds of cells simultaneously using calcium imaging in freely foraging mice, and thus we have an opportunity to analyze the network properties and dynamics of hippocampal place cells during foraging and other behavioral tasks.

Algorithms an for Bi-Level optimization problems
This project focuses on methods that smartly exploit the special structure of the constraint set (as a solution set of another optimization problem) and involves explicit operations for solving bi-level optimization problems. Among several theoretical results, we have provided in recent papers, the convergence rate result of the... more

## Algorithms an for Bi-Level optimization problems

This project focuses on methods that smartly exploit the special structure of the constraint set (as a solution set of another optimization problem) and involves explicit operations for solving bi-level optimization problems. Among several theoretical results, we have provided in recent papers, the convergence rate result of the sequence of function values is special since it is the first of its kind. This area of research is thriving for new algorithms for tackling various bi-level problems.

Methods for Wireless Sensor Network Localization
This project focuses on the design, analysis, development, and practical implementation of simple algorithms for solving the Wireless Sensor Network (WSN) Localization problems. In a recent paper, we solve the original non-convex and non-smooth formulation using first-order methods. We proposed a parameter-free algorithmic frame... more

## Methods for Wireless Sensor Network Localization

This project focuses on the design, analysis, development, and practical implementation of simple algorithms for solving the Wireless Sensor Network (WSN) Localization problems. In a recent paper, we solve the original non-convex and non-smooth formulation using first-order methods. We proposed a parameter-free algorithmic framework that includes the whole spectrum ranging from a fully centralized to a fully distributed implementation, and that it can also achieve partial parallelization.

Optimization methods for deep neural networks
In this project, we address a structured deep learning optimization problems, which are given by the sum of non-convex and non-smooth functions. As an example, we study a particular case of structure where the non-smoothness is represented as the maximum of non-convex smooth functions. Recently, for the structure of maximum, we ... more

## Optimization methods for deep neural networks

In this project, we address a structured deep learning optimization problems, which are given by the sum of non-convex and non-smooth functions. As an example, we study a particular case of structure where the non-smoothness is represented as the maximum of non-convex smooth functions. Recently, for the structure of maximum, we have developed, the Stochastic Proximal Linear Method (SPLM) that is guaranteed to reach a critical point of this learning objective and analyze its convergence rate.

Mechanisms of cancer cells’ anchorage-independence
A hallmark of cancer cells is their ‘anchorage-independence’, i.e., they are able to grow under conditions that do not support strong attachment of the cells. This trait has been identified more than six decades ago, but is still poorly understood from a mechano-biological point of view. Our lab studies the ways by which can... more

## Mechanisms of cancer cells’ anchorage-independence

A hallmark of cancer cells is their ‘anchorage-independence’, i.e., they are able to grow under conditions that do not support strong attachment of the cells. This trait has been identified more than six decades ago, but is still poorly understood from a mechano-biological point of view. Our lab studies the ways by which cancer cells lose their normal mechanosensing abilities to become non-dependent on the signals from their environment.

Mechanobiology of pancreatic cancer
Pancreatic ductal adenocarcinoma (PDAC) is an extremely deadly disease that is projected to become the second-most deadly cancer in the next decade. PDAC is characterized by an extremely dense and stiff extracellular matrix that surrounds the tumor cells, which is considered to play a major role in PDAC progression and metastasi... more

## Mechanobiology of pancreatic cancer

Pancreatic ductal adenocarcinoma (PDAC) is an extremely deadly disease that is projected to become the second-most deadly cancer in the next decade. PDAC is characterized by an extremely dense and stiff extracellular matrix that surrounds the tumor cells, which is considered to play a major role in PDAC progression and metastasis. Our lab studies the interactions between PDAC cells and their environment with the goal of identifying potential mechanobiological therapeutic targets.

Cellular sensing of environmental mechanical signals
Cells in our bodies respond not only to biochemical signals (hormones, growth factors), but also to the mechanical features of their environment, including, e.g., topography, rigidity. This indicates that cells can actively test the environment. Our lab studies the fundamental mechanisms by which this sensing is achieved. We com... more

## Cellular sensing of environmental mechanical signals

Cells in our bodies respond not only to biochemical signals (hormones, growth factors), but also to the mechanical features of their environment, including, e.g., topography, rigidity. This indicates that cells can actively test the environment. Our lab studies the fundamental mechanisms by which this sensing is achieved. We combine the use of nano- and micro-fabricated surfaces with advanced imaging and machine learning for image analysis to study the subcellular machineries involved in this process.

Situated Temporal Planning
In domains where planning is slow compared to the evolution of the environment, it can be important to take into account the time taken by the planning process itself.  For one example, plans involving taking a certain bus are of no use if planning finishes after the bus departs.  We call this setting situated temporal plannin... more

## Situated Temporal Planning

In domains where planning is slow compared to the evolution of the environment, it can be important to take into account the time taken by the planning process itself.  For one example, plans involving taking a certain bus are of no use if planning finishes after the bus departs.  We call this setting situated temporal planning and we define it as a variant of temporal planning with timed initial literals.

Coordinating Multiple Robots Using Social Laws
Robots operating in the real world must perform their task in an uncertain, partially observable environment, while interacting with other robots. This interaction makes the problem much more difficult to solve. The key insight motivating this project is that it is possible to make the robot's job online much easier by modifying... more

## Coordinating Multiple Robots Using Social Laws

Robots operating in the real world must perform their task in an uncertain, partially observable environment, while interacting with other robots. This interaction makes the problem much more difficult to solve. The key insight motivating this project is that it is possible to make the robot’s job online much easier by modifying the problem setting offline, before the robot starts operating by instituting a social law — a convention governing what is allowed behavior.

Implementing a Precision Medicine Paradigm in Primary Care Clinics
A randomized controlled trial of 20 intervention clinics and 20 usual-care control clinics to establish the value (better health? Better use of resources?) of implementing precision medicine tools into primary clinical practice. Intervention includes testing of DNA with different level platforms (from NGS panels, to GWAS, WES an... more

## Implementing a Precision Medicine Paradigm in Primary Care Clinics

A randomized controlled trial of 20 intervention clinics and 20 usual-care control clinics to establish the value (better health? Better use of resources?) of implementing precision medicine tools into primary clinical practice. Intervention includes testing of DNA with different level platforms (from NGS panels, to GWAS, WES and WGS), of microbiome, use of wearable devices/sensors. The adult population of the study clinics includes some 140,000 people and if enough resources will be obtained, the study is expected to reach some 100,000 participants. Current resources allowed us to break ground in one clinic with 1,660 people already signed a consent. Study is National IRB approved.

Precision medicine - pharmacogenetics
GWAS-based study of >10,000 Israelis of various ethnicities serving among other purposes to establish an ethnic-specific (Jews/Arabs, Ashkenazi/Sephardi) atlas of frequencies of pharmacogenetic variants. Identify new associations between medication use in this cohort and identified SNPs. GWAS was carried out using the Illumin... more

## Precision medicine - pharmacogenetics

GWAS-based study of >10,000 Israelis of various ethnicities serving among other purposes to establish an ethnic-specific (Jews/Arabs, Ashkenazi/Sephardi) atlas of frequencies of pharmacogenetic variants. Identify new associations between medication use in this cohort and identified SNPs. GWAS was carried out using the Illumina 500K Onco SNP array. Study is National IRB approved. Funded by MOST.

gene-environment interactions in the etiology of common cancers
More than 40,000 participants in case-control studies of breast/colorectal/lung/gynecological/pancreato-hepato-biliary cancers. For each participant we have long entry questionnaire (800 questions: health habits, health status, family history, more…), blood sample (DNA), tumor tissue sample (for many), EMR of follow-up. Every ... more

## gene-environment interactions in the etiology of common cancers

More than 40,000 participants in case-control studies of breast/colorectal/lung/gynecological/pancreato-hepato-biliary cancers. For each participant we have long entry questionnaire (800 questions: health habits, health status, family history, more…), blood sample (DNA), tumor tissue sample (for many), EMR of follow-up. Every cancer case has a matched control without cancer. All studies are National IRB approved. Partially funded by various agencies, BCRF, ICRF…

As LiDAR sensors for depth acquisition advance to solid-state technologies, new capabilities raise new theoretical and technological challenges. In particular, we investigate benefits afforded by controlling and changing in real time the sampling scheme (adaptive sampling). We use neural-network to predict the optimal sampling s... more

As LiDAR sensors for depth acquisition advance to solid-state technologies, new capabilities raise new theoretical and technological challenges. In particular, we investigate benefits afforded by controlling and changing in real time the sampling scheme (adaptive sampling). We use neural-network to predict the optimal sampling scheme per scene, given a fixed sampling budget. We found  that for a given RMSE, the sampling budget can be reduced by a factor of about 4 on average. Various strategies and algorithms are examined.

People:
Guy Gilboa
We investigate analytic and numerical solutions of nonlinear gradient flows. We examine the flows as nonlinear PDE’s and use tools from nonlinear spectral theory. We have recently revealed relations between Dynamic mode decomposition (DMD), a common tool for fluid dynamics, and nonlinear eigenfunctions related to homogeneous f... more

We investigate analytic and numerical solutions of nonlinear gradient flows. We examine the flows as nonlinear PDE’s and use tools from nonlinear spectral theory. We have recently revealed relations between Dynamic mode decomposition (DMD), a common tool for fluid dynamics, and nonlinear eigenfunctions related to homogeneous flows. We are investigating through this lens gradient descent algorithms of complex systems.

People:
Guy Gilboa
Nonlinear spectral theory
We examine how to define systems and signals through nonlinear eigenvalue analysis. For example – we developed an image representation based on the total-variation transform. We also examine neural-networks through eigen-analysis and design algorithms to reveal their (nonlinear) eigenfunctions.
People:
Guy Gilboa
A social-constructivist approach to online ethics education
The growing trend of shifting from classroom to distance learning in ethics education programs raises the need to examine ways for adapting best instructional practices to online modes. To address this need, the current study is set to apply a social constructivist approach to an online course in research ethics and to examine ... more

## A social-constructivist approach to online ethics education

The growing trend of shifting from classroom to distance learning in ethics education programs raises the need to examine ways for adapting best instructional practices to online modes. To address this need, the current study is set to apply a social constructivist approach to an online course in research ethics and to examine its effect on the learning outcomes of science and engineering graduate students.

AugmentedWorld is an open, collaborative, and interactive location-based platform, purposefully designed to provide science teachers and students an online tool for generating multimedia-rich questions. It is based on the notion that questions are the source of all knowledge and that students should be skilled in generating ques... more

## AugmentedWorld: Promoting 21st century skills

AugmentedWorld is an open, collaborative, and interactive location-based platform, purposefully designed to provide science teachers and students an online tool for generating multimedia-rich questions. It is based on the notion that questions are the source of all knowledge and that students should be skilled in generating questions and not only in answering them. Our goal is to examine the cognitive and social impact of AugmentedWorld on science teachers and students.

Cultivating innovation among engineering students
At the brink of the fourth industrial revolution, a significant transition is taking place from simple digitization to innovation-based technology. Innovation, the process of generating new ideas and transforming them into practical solutions, is a catalyst for progress in our fast-changing world. The goal of our study is to ass... more

## Cultivating innovation among engineering students

At the brink of the fourth industrial revolution, a significant transition is taking place from simple digitization to innovation-based technology. Innovation, the process of generating new ideas and transforming them into practical solutions, is a catalyst for progress in our fast-changing world. The goal of our study is to assess the innovation level of engineering students’ team projects and to examine the relationships between project innovation and team heterogeneity in online and F2F environments.

Train medical surgery skills by using sensors in simulators
We have several simulators for training medical doctors in cutting edge surgery skills. We use insights regarding biases in mental effort regulation to improve self-training protocols.
Use user behavior to improve automatic database schema matching
Database schema matching is a challenging task that call for improvement for several decades. Automatic algorithms fail to provide reliable enough results. We use human matching to overcome algorithm failures and vice versa. We refer to human and algorithmic matchers as imperfect matchers with different strengths and weaknesses.... more

## Use user behavior to improve automatic database schema matching

Database schema matching is a challenging task that call for improvement for several decades. Automatic algorithms fail to provide reliable enough results. We use human matching to overcome algorithm failures and vice versa. We refer to human and algorithmic matchers as imperfect matchers with different strengths and weaknesses. We use insights from cognitive research to predict human matchers behavior and identify those who can do better than others. We then merge their responses with algorithmic outcomes and get better results.

Infer subjective confidence of users based on mouse tracking
As a team, we currently work on several projects, with several challenging tasks, including riddle solving, database schema matching, and text design in a word processor. In all cases we aim to predict people’s confidence in their success in the task based on their mouse movements before choosing their response and while ratin... more

## Infer subjective confidence of users based on mouse tracking

As a team, we currently work on several projects, with several challenging tasks, including riddle solving, database schema matching, and text design in a word processor. In all cases we aim to predict people’s confidence in their success in the task based on their mouse movements before choosing their response and while rating their confidence on a continuous scale.

Information design
Consider a setting where one agent holds private information and would like to use her information to motivate another agent to take some action. When agents’ interests co-incide the answer is easy - disclose the full information. In this project we study the optimal information design when agents’ incentives are mis-aligned... more

## Information design

Consider a setting where one agent holds private information and would like to use her information to motivate another agent to take some action. When agents’ interests co-incide the answer is easy – disclose the full information. In this project we study the optimal information design when agents’ incentives are mis-aligned.

Expert testing
A self-proclaimed agent provides probabilistic forecasts over a sequence of events. In this project we ask how can we distinguish between genuine experts and charlatans?
Stochastic Image Denoising by Sampling from the Posterior Distribution
Image denoising is a well-known and well studied problem, commonly targeting a minimization of the mean squared error (MSE) between the outcome and the original image. Unfortunately, especially for severe noise levels, such Minimum MSE (MMSE) solutions may lead to blurry output images. In this work we propose a novel stochastic ... more

## Stochastic Image Denoising by Sampling from the Posterior Distribution

Image denoising is a well-known and well studied problem, commonly targeting a minimization of the mean squared error (MSE) between the outcome and the original image. Unfortunately, especially for severe noise levels, such Minimum MSE (MMSE) solutions may lead to blurry output images. In this work we propose a novel stochastic denoising approach that produces viable and high perceptual quality results, while maintaining a small MSE. Our method employs Langevin dynamics that relies on a repeated application of any given MMSE denoiser, obtaining the reconstructed image by effectively sampling from the posterior distribution. Due to its stochasticity, the proposed algorithm can produce a variety of high-quality outputs for a given noisy input, all shown to be legitimate denoising results. In addition, we present an extension of our algorithm for handling the inpainting problem, recovering missing pixels while removing noise from partially given data.

High Perceptual Quality Image Denoising with a Posterior Sampling CGAN
The vast work in Deep Learning (DL) has led to a leap in image denoising research. Most DL solutions for this task have chosen to put their efforts on the denoiser's architecture while maximizing distortion performance. However, distortion driven solutions lead to blurry results with sub-optimal perceptual quality, especially in... more

## High Perceptual Quality Image Denoising with a Posterior Sampling CGAN

The vast work in Deep Learning (DL) has led to a leap in image denoising research. Most DL solutions for this task have chosen to put their efforts on the denoiser’s architecture while maximizing distortion performance. However, distortion driven solutions lead to blurry results with sub-optimal perceptual quality, especially in immoderate noise levels. In this paper we propose a different perspective, aiming to produce sharp and visually pleasing denoised images that are still faithful to their clean sources. Formally, our goal is to achieve high perceptual quality with acceptable distortion. This is attained by a stochastic denoiser that samples from the posterior distribution, trained as a generator in the framework of conditional generative adversarial networks (CGAN). Contrary to distortion-based regularization terms that conflict with perceptual quality, we introduce to the CGAN objective a theoretically founded penalty term that does not force a distortion requirement on individual samples, but rather on their mean. We showcase our proposed method with a novel denoiser architecture that achieves the reformed denoising goal and produces vivid and diverse outcomes in immoderate noise levels.

Patch Craft: Video Denoising by Deep Modeling and Patch Matching
The non-local self-similarity property of natural images has been exploited extensively for solving various image processing problems. When it comes to video sequences, harnessing this force is even more beneficial due to the temporal redundancy. In the context of image and video denoising, many classically-oriented algorithms e... more

## Patch Craft: Video Denoising by Deep Modeling and Patch Matching

The non-local self-similarity property of natural images has been exploited extensively for solving various image processing problems. When it comes to video sequences, harnessing this force is even more beneficial due to the temporal redundancy. In the context of image and video denoising, many classically-oriented algorithms employ self-similarity, splitting the data into overlapping patches, gathering groups of similar ones and processing these together somehow. With the emergence of convolutional neural networks (CNN), the patch-based framework has been abandoned. Most CNN denoisers operate on the whole image, leveraging non-local relations only implicitly by using a large receptive field. This work proposes a novel approach for leveraging self-similarity in the context of video denoising, while still relying on a regular convolutional architecture. We introduce a concept of patch-craft frames – artificial frames that are similar to the real ones, built by tiling matched patches. Our algorithm augments video sequences with patch-craft frames and feeds them to a CNN. We demonstrate the substantial boost in denoising performance obtained with the proposed approach.

Perturbation models
Statistically reasoning about complex systems involves a probability distribution over exponentially many configurations. For example, semantic labeling of an image requires to infer a discrete label for each image pixel, hence resulting in possible segmentations which are exponential in the numbers of pixels. Standard approache... more

## Perturbation models

Statistically reasoning about complex systems involves a probability distribution over exponentially many configurations. For example, semantic labeling of an image requires to infer a discrete label for each image pixel, hence resulting in possible segmentations which are exponential in the numbers of pixels. Standard approaches such as Gibbs sampling are slow in practice and cannot be applied to many real-life problems. Our goal is to integrate optimization and sampling through extreme value statistics and to define new statistical framework for which sampling and parameter estimation in complex systems are efficient. This framework is based on measuring the stability of prediction to random changes in the potential interactions.

Factor Graph Attention models
Deep learning revolutionized AI and machine learning techniques can be used to achieve human-like behavior. To better address complex tasks such as visual-dialog or visual navigation we designed a general attention mechanism that use a factor graph based attention mechanism which can combines high-dimensional information that go... more

## Factor Graph Attention models

Deep learning revolutionized AI and machine learning techniques can be used to achieve human-like behavior. To better address complex tasks such as visual-dialog or visual navigation we designed a general attention mechanism that use a factor graph based attention mechanism which can combines high-dimensional information that govern complex tasks. This framework allowed us to win the visual dialog challenge of CVPR 2020

Online Constrained Optimization
Online convex optimization has been extensively studied in the recent learning literature. In this ongoing theoretical work, we extend the framework to consider similarly formulated online average cost constraints.
Deep-Learning Flow Control in Cellular Channels
Cellular channels are increasingly used for sensitive real-time applications. For example, real time video can now be broadcast over parallel cellular channel, possibly from a moving vehicle. Such channels are characterized by high variability, and require improved flow control algorithms to maintain stable flow. This work addre... more

## Deep-Learning Flow Control in Cellular Channels

Cellular channels are increasingly used for sensitive real-time applications. For example, real time video can now be broadcast over parallel cellular channel, possibly from a moving vehicle. Such channels are characterized by high variability, and require improved flow control algorithms to maintain stable flow. This work addresses the application of deep learning algorithms to develop suitable flow control and scheduling algorithm under real-time delay constraints.

Markov Decision Processes with Burstiness Constraints
Burstiness Constraints characterize various dynamic processes, such as traffic demand in communication networks. We consider the optimal control of MDPs subject to such constraints, providing the theoretical framework and effective algorithms for this problem.
Shape reconstruction
Computational methods in stereoscopic imaging and other depth from X, recognition, and understanding.
People:
Ron Kimmel
Non-rigid shape analysis
Finding computational methods for matching and analysis of non-rigid shapes. From a computational point of view we cannot use convolution here, so we design and explore other deep learning venues.
People:
Ron Kimmel
Computational Pathology
Using H&E-stained histology slides to predict treatment outcomes for efficient cancer treatment.  We use all variations of deep learning (mainly CNNs).
People:
Ron Kimmel
The vision of the consortium, of which our lab is part, is to develop generic technologies for analysis and use of information of raw materials, production processes and the consumer, in order to enable connectivity throughout the value chain and bring about a paradigm shift in which food is produced with the highest efficiency ... more

## Food-IoT - Generic Technologies for Advancing the Food Value Chain

The vision of the consortium, of which our lab is part, is to develop generic technologies for analysis and use of information of raw materials, production processes and the consumer, in order to enable connectivity throughout the value chain and bring about a paradigm shift in which food is produced with the highest efficiency and safety.

People:
Dov Dori
TRACOD – short for TRAck the COD fish, is an EIT Food project aimed at improving the ability of producers and consumers to track freshness and nutritional values of fresh fish, including cod, salmon, and other white fish species. TRACOD uses models implemented in an app for interacting with stakeholders and includes an edu... more

## TRACOD – Tracking the Cod Fish Nutritional Value

TRACOD – short for TRAck the COD fish, is an EIT Food project aimed at improving the ability of producers and consumers to track freshness and nutritional values of fresh fish, including cod, salmon, and other white fish species. TRACOD uses models implemented in an app for interacting with stakeholders and includes an education component for endowing food engineers with a systems approach. TRACOD also engages future food engineers in conceptual modeling as part of model-based systems engineering of food production and supply systems.

People:
Dov Dori
OPCloud is a web-based collaborative software environment for creating conceptual models of systems and phenomena with OPM standard  ISO 19450:2015. It is used in dozens of universities and enterprises, and its development is continuously adding new features and capabilities.
People:
Dov Dori
Creating quantum states of light of many photons
The need to create quantum states of light, such as entangled photons, arises from their importance in the fields of quantum information and quantum optics. In recent years, quantum cluster states were used in quantum computation, entangled photons were used to demonstrate quantum teleportation, and quantum hyper-dense coding pr... more

## Creating quantum states of light of many photons

The need to create quantum states of light, such as entangled photons, arises from their importance in the fields of quantum information and quantum optics. In recent years, quantum cluster states were used in quantum computation, entangled photons were used to demonstrate quantum teleportation, and quantum hyper-dense coding protocols enable breaking the classical limit for information transfer. All these applications require efficient methods for generation of quantum light.

Our project develops new approaches for creating many-photon quantum light, by using recent advances in quantum electrodynamics and quantum optics. These advances are especially promising for creating deterministic, heralded, entangled photon sources.

Irrationality Measures and Polynomial Continued Fractions
Linear recursions with integer coefficients, such as the recursion of the Fibonacci sequence, have been intensely studied over millennia, yet still hide interesting undiscovered mathematics. Such a recursion was used by Apéry in his proof of the irrationality of certain values of the Riemann zeta function. Similar recursions ca... more

## Irrationality Measures and Polynomial Continued Fractions

Linear recursions with integer coefficients, such as the recursion of the Fibonacci sequence, have been intensely studied over millennia, yet still hide interesting undiscovered mathematics. Such a recursion was used by Apéry in his proof of the irrationality of certain values of the Riemann zeta function. Similar recursions can prove the irrationality of other fundamental constants such as π and e. However, it is not generally known under what conditions a linear recursion can be used to prove irrationality.

Our project develops new hypotheses and proofs for linear recursions. Specifically, we generalize Apéry’s work, finding the conditions for which similar recursions can be used to prove irrationality.

Looking forward, we would like to search for a wider theory on sequences created by any linear recursion with integer coefficients. Such results can help develop systematic algorithms for finding formulas for fundamental constants and contribute to ongoing efforts to answer open questions like proving the irrationality of values of the Reimann zeta function (e.g., ζ(5)).

The Ramanujan Machine: Auto-Generated Conjectures on Fundamental Constants
Fundamental mathematical constants like e and π are ubiquitous in diverse fields of science, from abstract mathematics to physics and biology. For centuries, new formulas relating fundamental constants have been scarce and usually discovered sporadically. Our project develops systematic approaches to leverages algorithms... more

## The Ramanujan Machine: Auto-Generated Conjectures on Fundamental Constants

Fundamental mathematical constants like e and π are ubiquitous in diverse fields of science, from abstract mathematics to physics and biology. For centuries, new formulas relating fundamental constants have been scarce and usually discovered sporadically.

Our project develops systematic approaches to leverages algorithms for deriving formulas for fundamental constants and help reveal their underlying structure.

This research reverses the conventional approach of sequential logic in formal proofs. Instead, our algorithms utilize numerical data to unveil mathematical structures, trying to play the role of intuition of great mathematicians of the past to find leads for future research.

Wearable tattoo for health monitoring
This project aims to develop a breakthrough smart health monitoring system, combining in the same solution, a sensor and an analytical modulus. The sensor modulus will be implemented by the construction of a new, tattoo-like wearable device. To both process and integrate the big data constantly gathered by the wearable, in a glo... more

## Wearable tattoo for health monitoring

This project aims to develop a breakthrough smart health monitoring system, combining in the same solution, a sensor and an analytical modulus. The sensor modulus will be implemented by the construction of a new, tattoo-like wearable device. To both process and integrate the big data constantly gathered by the wearable, in a global databank, an analytical modulus is also developed, to enable the establishment of individualized health patterns.

Wearable for Advancing Care for High-Risk Elderly
This project aims to stratify patient populations according to advanced risk assessment, to enable personalized self-management of ageing multimorbidity patients. This is done by designing a personalized, patient-centred and holistic approach that accounts for the individual’s medical history and lifestyle conditions, mental a... more

## Wearable for Advancing Care for High-Risk Elderly

This project aims to stratify patient populations according to advanced risk assessment, to enable personalized self-management of ageing multimorbidity patients. This is done by designing a personalized, patient-centred and holistic approach that accounts for the individual’s medical history and lifestyle conditions, mental and social state, etc., coupled with innovative non-invasive wearable sensing technology for continuous monitoring of health.

Sparsity Aware Normalization for GANs
Generative adversarial networks (GANs) are known to benefit from regularization or normalization of their discriminator network during training. In this work, we introduced sparsity aware normalization (SAN), a new method for stabilizing GAN training. Our method is particularly effective for image restoration and image-to-image ... more

## Sparsity Aware Normalization for GANs

Generative adversarial networks (GANs) are known to benefit from regularization or normalization of their discriminator network during training. In this work, we introduced sparsity aware normalization (SAN), a new method for stabilizing GAN training. Our method is particularly effective for image restoration and image-to-image translation. There, it significantly improves upon existing methods, like spectral normalization, while allowing using shorter training and smaller capacity networks, at no computational overhead.

Explorable Image Restoration
Image restoration methods do not allow exploring the infinitely many plausible reconstructions that might have given rise to the measured image. In this work, we introduced the task of explorable image restoration, and illustrated it for the tasks of super resolution and JPEG decompression. We proposed a framework comprising a g... more

## Explorable Image Restoration

Image restoration methods do not allow exploring the infinitely many plausible reconstructions that might have given rise to the measured image. In this work, we introduced the task of explorable image restoration, and illustrated it for the tasks of super resolution and JPEG decompression. We proposed a framework comprising a graphical user interface with a neural network backend, allowing editing the output to explore the abundance of plausible explanations to the input. We illustrated our approach in a variety of use cases, ranging from medical imaging and forensics to graphics (Oral presentations at CVPR20, CVPR21).

SinGAN: Learning a generative model from a single natural image
We introduced an unconditional generative model that can be learned from a single natural image. Our model, coined SinGAN, is trained to capture the internal distribution of patches within the image, and is then able to generate high quality, diverse samples of arbitrary size and aspect ratio, that carry the same visual content ... more

## SinGAN: Learning a generative model from a single natural image

We introduced an unconditional generative model that can be learned from a single natural image. Our model, coined SinGAN, is trained to capture the internal distribution of patches within the image, and is then able to generate high quality, diverse samples of arbitrary size and aspect ratio, that carry the same visual content as the image. We illustrated the utility of SinGAN in a wide range of image manipulation tasks. This work won the Best Paper Award (Marr Prize) at ICCV`19.

Massive Parallelization of Deep Learning
Improvements in training speed are needed to develop the next generation of deep learning models. To perform such a massive amount of computation in a reasonable time, it is parallelized across multiple GPU cores. Perhaps the most popular parallelization method is to use a large batch of data in each iteration of SGD, so the gra... more

## Massive Parallelization of Deep Learning

Improvements in training speed are needed to develop the next generation of deep learning models. To perform such a massive amount of computation in a reasonable time, it is parallelized across multiple GPU cores. Perhaps the most popular parallelization method is to use a large batch of data in each iteration of SGD, so the gradient computation can be performed in parallel on multiple workers. We aim to enable massive parallelization without performance degradation, as commonly observed.

Resource efficient deep learning
We aim to improve the resource efficiency of deep learning (e.g., energy, bandwidth) for training and inference. Our focus is decreasing the numerical precision of the neural network model is a simple and effective way to improve their resource efficiency. Nearly all recent deep learning related hardware relies heavily on lower ... more

## Resource efficient deep learning

We aim to improve the resource efficiency of deep learning (e.g., energy, bandwidth) for training and inference. Our focus is decreasing the numerical precision of the neural network model is a simple and effective way to improve their resource efficiency. Nearly all recent deep learning related hardware relies heavily on lower precision math. The benefits are a reduction in the memory required to store the neural network, a reduction in chip area, and a drastic improvement in energy efficiency.

Understanding and controlling the implicit bias in deep learning
Significant research efforts are being invested in improving Deep Neural Networks (DNNs) via various modifications. However, such modifications often cause an unexplained degradation in the generalization performance DNNs to unseen data. Recent findings suggest that this degradation is caused by changes to the hidden algorithmi... more

## Understanding and controlling the implicit bias in deep learning

Significant research efforts are being invested in improving Deep Neural Networks (DNNs) via various modifications. However, such modifications often cause an unexplained degradation in the generalization performance DNNs to unseen data. Recent findings suggest that this degradation is caused by changes to the hidden algorithmic bias of the training algorithm and model. This bias determines which solution is selected from all solutions which fit the data. We aim to understand and control this algorithmic bias.

Information Storage in Models of Human Language
This project seeks to elucidate the mechanisms of information storage and processing in machine learning systems of human language, by (a) measuring localization and distributivity of information in complex models; (b) discovering causal relationships between model components and automatic (potentially biased) decisions; and (c)... more

## Information Storage in Models of Human Language

This project seeks to elucidate the mechanisms of information storage and processing in machine learning systems of human language, by (a) measuring localization and distributivity of information in complex models; (b) discovering causal relationships between model components and automatic (potentially biased) decisions; and (c) making language processing systems more interpretable and controllable. The research is expected to promote responsible and accountable adoption of language technology.

Interpretability and Robustness in NLP
Despite the empirical success of deep learning models in natural language processing (NLP), these models face two challenges: they are opaque and difficult to interpret; and they are fragile and not robust to shifts in the data distribution. This project studies the relationship between interpretability and robustness in NLP: ar... more

## Interpretability and Robustness in NLP

Despite the empirical success of deep learning models in natural language processing (NLP), these models face two challenges: they are opaque and difficult to interpret; and they are fragile and not robust to shifts in the data distribution. This project studies the relationship between interpretability and robustness in NLP: are more robust models also more interpretable, and vice versa? This research is expected to facilitate the development of models that more trustworthy, fair, and reliable.

Queue mining for delay prediction in multi-class service processes
Information recorded by service systems (e.g., in the telecommunication, finance, and health sectors) during their operation provides an angle for operational process analysis, commonly referred to as process mining. Here we establish a queueing perspective in process mining to address the online delay prediction problem, which ... more

## Queue mining for delay prediction in multi-class service processes

Information recorded by service systems (e.g., in the telecommunication, finance, and health sectors) during their operation provides an angle for operational process analysis, commonly referred to as process mining. Here we establish a queueing perspective in process mining to address the online delay prediction problem, which refers to the time that the execution of an activity for a running instance of a service process is delayed due to queueing effects. We develop predictors for waiting-times from event logs recorded by an information system during process execution. Based on large datasets from the telecommunications and financial sectors, our evaluation demonstrate accurate online predictions, which drastically improve over predictors neglecting the queueing perspective.

Data-Driven Appointment-Scheduling Under Uncertainty
Service systems are often stochastic and preplanned by appointments, yet implementations of their appointment systems are prevalently deterministic. We address this gap, between planned and reality, by developing data-driven methods for appointment scheduling and sequencing – the result are tractable and scalable solutions tha... more

## Data-Driven Appointment-Scheduling Under Uncertainty

Service systems are often stochastic and preplanned by appointments, yet implementations of their appointment systems are prevalently deterministic. We address this gap, between planned and reality, by developing data-driven methods for appointment scheduling and sequencing – the result are tractable and scalable solutions that accommodate hundreds of jobs and servers. To test for practical performance, we leverage a unique data set from a cancer center that combines real-time locations, electronic health records, and appointments log. Focusing on one of the center’s infusion units, we reduce cost (waiting plus overtime) on the order of 15%–40% consistently.

Development of better tools for proteomics and peptidomics research
The analysis of the big data that is obtained by genomics, and combining it with the mass spectrometry-based proteomics and peptidomics data is that main scope of this research. The limiting factor is informatic analysis of the data.
People:
Development of personal immunotherapy for cancer, and autoimmunity
The project focus is on molecular immunology, with a special interest HLA-peptidomics; aiming at characterization of the full repertoires of HLA peptides presented by human cells (HLA peptidome) and the implementation of the HLA peptidomics into development of personalized immunotherapy. The other aim is to block the specific i... more

## Development of personal immunotherapy for cancer, and autoimmunity

The project focus is on molecular immunology, with a special interest HLA-peptidomics; aiming at characterization of the full repertoires of HLA peptides presented by human cells (HLA peptidome) and the implementation of the HLA peptidomics into development of personalized immunotherapy.
The other aim is to block the specific immune reaction during autoimmunity and inflammatory diseases. The main tools of peptidomics, and proteomics, are mass spectrometry and bioinformatics.

People:
Real-Time Health Monitoring
Contemporary medicine suffers from impactful shortcomings in terms of successful disease diagnosis and treatment. Diagnostic delays and/or inaccuracies can cause harm to patients by preventing or delaying appropriate treatment, providing unnecessary or harmful treatment, or result in psychological burden or financial repercussio... more

## Real-Time Health Monitoring

Contemporary medicine suffers from impactful shortcomings in terms of successful disease diagnosis and treatment. Diagnostic delays and/or inaccuracies can cause harm to patients by preventing or delaying appropriate treatment, providing unnecessary or harmful treatment, or result in psychological burden or financial repercussions. Our objective is to develop an AI-based smart health monitoring system for non-intrusive, continuous, real-time and personalized detection of physical and (bio)chemical markers that are linked with overall health of the human body.

Super-Resolution of Dynamic Elavation Model
Our goal is to develop multi-modal neural network architectures for the tasks of guided super-resolution (SR) of dynamic elevation models (DEM). Current DEMs for most of the earth surface is still low resolution (sometimes 2 meters per pixel, but more often 10, 15, or 30 meters per pixel) and thus cannot accurately represent the... more

## Super-Resolution of Dynamic Elavation Model

Our goal is to develop multi-modal neural network architectures for the tasks of guided super-resolution (SR) of dynamic elevation models (DEM). Current DEMs for most of the earth surface is still low resolution (sometimes 2 meters per pixel, but more often 10, 15, or 30 meters per pixel) and thus cannot accurately represent the morphology of the terrain. High resolution DEMs, however, have many uses, including precision agriculture, urban mapping, high-definition maps for autonomous navigation, line-of-sight analysis, and more.

Residual Echo Suppression Using Deep Learning
We address the problem of residual echo suppression (RES) in real-life acoustic environments that often include low signal-to-noise ratios, reverberations, and degraded audio measurements. We propose a low power, low-resources, on-device system that receives a dual-channel audio streaming as waveform and applies deep learning-ba... more

## Residual Echo Suppression Using Deep Learning

We address the problem of residual echo suppression (RES) in real-life acoustic environments that often include low signal-to-noise ratios, reverberations, and degraded audio measurements. We propose a low power, low-resources, on-device system that receives a dual-channel audio streaming as waveform and applies deep learning-based echo cancellation to it. This solution can benefit many practical speech-based hands-free communication platforms such as smart-phones, conference room speakerphones, and smart speakers like Amazon Alexa and Google Home.

PET/CT Analysis using Spectral Total Variation
Spectral total variation’s ability to provide metrics for the automatic detection of bone malignant lesions and to differentiate those lesions from non-cancerous findings will be assessed for a hybrid positron emission tomography/x-ray computed tomography (PET/CT) scanner.  By detecting tissue metabolism changes using fluorin... more

## PET/CT Analysis using Spectral Total Variation

Spectral total variation’s ability to provide metrics for the automatic detection of bone malignant lesions and to differentiate those lesions from non-cancerous findings will be assessed for a hybrid positron emission tomography/x-ray computed tomography (PET/CT) scanner.  By detecting tissue metabolism changes using fluorine-18-2-fluoro-2-deoxy-D-glucose PET and demonstrating bone structure changes using CT, PET/CT can identify cancer lesions and impact patient diagnosis and management.

Function-Correcting Codes
Motivated by applications in machine learning and archival storage, we introduce function-correcting codes (FCCs), a new class of codes to protect a function evaluation of the data against errors. We show that FCCs are equivalent to irregular-distance codes, i.e., codes that obey some given distance requirement between each pair... more

## Function-Correcting Codes

Motivated by applications in machine learning and archival storage, we introduce function-correcting codes (FCCs), a new class of codes to protect a function evaluation of the data against errors. We show that FCCs are equivalent to irregular-distance codes, i.e., codes that obey some given distance requirement between each pair of codewords. Using these connections, we study these codes and derive general upper and lower bounds on their optimal redundancy. Since these bounds depend on the specific function, we provide simplified, suboptimal bounds that are easier to evaluate.

Weakly Private Information Retrieval
Private information retrieval (PIR) protocols make it possible to retrieve a file from a database without disclosing any information about the identity of the file being retrieved. While existing protocols strictly impose that no information is leaked on the file's identity, this project initiates the study of the tradeoffs that... more

## Weakly Private Information Retrieval

Private information retrieval (PIR) protocols make it possible to retrieve a file from a database without disclosing any information about the identity of the file being retrieved. While existing protocols strictly impose that no information is leaked on the file’s identity, this project initiates the study of the tradeoffs that can be achieved by relaxing the requirement of perfect privacy. We propose to study this problem when the database is either replicated or is stored distributively over several servers, and when it is simply stored by a single server.

Weakly Private Information Retrieval
Private information retrieval (PIR) protocols make it possible to retrieve a file from a database without disclosing any information about the identity of the file being retrieved. While existing protocols strictly impose that no information is leaked on the file's identity, this project initiates the study of the tradeoffs that... more

## Weakly Private Information Retrieval

Private information retrieval (PIR) protocols make it possible to retrieve a file from a database without disclosing any information about the identity of the file being retrieved. While existing protocols strictly impose that no information is leaked on the file’s identity, this project initiates the study of the tradeoffs that can be achieved by relaxing the requirement of perfect privacy. We propose to study this problem when the database is either replicated or is stored distributively over several servers, and when it is simply stored by a single server.

Reconstruction Algorithms for DNA-Storage Systems
In the trace reconstruction problem a length-n string x yields a collection of noisy traces, where each is independently obtained from x by passing through a deletion channel, which deletes every symbol with some fixed probability. The main goal under this paradigm is to determine the required minimum number of i.i.d traces in o... more

## Reconstruction Algorithms for DNA-Storage Systems

In the trace reconstruction problem a length-n string x yields a collection of noisy traces, where each is independently obtained from x by passing through a deletion channel, which deletes every symbol with some fixed probability. The main goal under this paradigm is to determine the required minimum number of i.i.d traces in order to reconstruct x with high probability. The focus of this work is to extend this problem to the model where each trace is a result of x passing through a deletion-insertion-substitution channel.

We currently put a special focus on the problem of domain adaptation. More specifically, we study the problem of domain adaptation on manifolds (learned and analytic) and develop methods based on geometric considerations.
Riemannian Geometry & Manifolds
We study the manifold of diffusion operators, on which we can define geometric, differential, and probabilistic structures. This research direction entails a fresh approach to multi-manifold learning, departing from the traditional use of spectral decomposition of diffusion operators for embedding. Diffusion operators are posit... more

## Riemannian Geometry & Manifolds

We study the manifold of diffusion operators, on which we can define geometric, differential, and probabilistic structures. This research direction entails a fresh approach to multi-manifold learning, departing from the traditional use of spectral decomposition of diffusion operators for embedding.
Diffusion operators are positive (semi-)definite and have a particular Riemannian geometry. While each diffusion operator extracts the manifold of a single data set, transportation of diffusion operators on the associated Riemannian manifold enables us to merge and compare multiple data sets.

Multimodal Data Analysis & Fusion
One of the long-standing challenges in signal processing and data analysis is the fusion of information acquired by multiple, multimodal sensors. Of particular interest in the context of our research are the massive data sets of medical recordings and healthcare-related information, acquired routinely in operation rooms, intens... more

## Multimodal Data Analysis & Fusion

One of the long-standing challenges in signal processing and data analysis is the fusion of information acquired by multiple, multimodal sensors.
Of particular interest in the context of our research are the massive data sets of medical recordings and healthcare-related information, acquired routinely in operation rooms, intensive care units, and clinics. Such distinct and complementary information calls for the development of new theories and methods, leveraging it toward achieving concrete objectives such as analysis, filtering, and prediction, in a broad range of fields.

Sparse Integer Programming
Integer Programming is a fundamental framework for discrete optimization with generic modeling power and numerous applications. We are developing an algebraic theory that enables to solve large integer programming problems with large numbers of variables over sparse systems. In particular, we have recently shown that integer pr... more

## Sparse Integer Programming

Integer Programming is a fundamental framework for discrete optimization with generic modeling power and numerous applications. We are developing an algebraic theory that enables to solve large integer programming problems with large numbers of variables over sparse systems.
In particular, we have recently shown that integer programming is fixed-parameter tractable when parameterized by the numeric measure and the sparsity measure of the system at hand.

People:
Shmuel Onn
Empirical Bayes Approach to Truth Discovery
Consider a group of workers who answered questions, which have a correct yet unknown answers. The workers are heterogenous, they could be ordinary people, trained volunteers, a panel of experts, different computer algorithms, or a mix of all the above. Our approach is based on empirical Bayes methods and the aim is to construct ... more

## Empirical Bayes Approach to Truth Discovery

Consider a group of workers who answered questions, which have a correct yet unknown answers. The workers are heterogenous, they could be ordinary people, trained volunteers, a panel of experts, different computer algorithms, or a mix of all the above. Our approach is based on empirical Bayes methods and the aim is to construct an algorithm that aggregates all workers’ answers to a single output that is close to the unknown truth.  (MSc student: Tsviel Ben-Shabat, co-advisor: Reshef Meir)

Variance Estimation in High-Dimensional Data
We study a regression model in the context of high-dimensional and semi-supervised settings, making minimal assumptions on the distribution of the data. The goal is to estimate the fraction of variance explained by the best linear model without assuming linearity. (PhD student: Ilan Livne, co-advisor: Yair Goldberg).
Intelligent patient monitoring in the intensive care unit
Intensive care medicine is complex, resource intensive and expensive. It is a dynamic and highly technical field of medicine, taking care of the sickest patients. Decisions need to be made rapidly based on the evolving clinical state of the patient which can fluctuate over seconds and minutes. We develop ML models to tackle majo... more

## Intelligent patient monitoring in the intensive care unit

Intensive care medicine is complex, resource intensive and expensive. It is a dynamic and highly technical field of medicine, taking care of the sickest patients. Decisions need to be made rapidly based on the evolving clinical state of the patient which can fluctuate over seconds and minutes. We develop ML models to tackle major predictive challenges for critically-ill patients. Specifically, models that predict an upcoming possible adverse event to provide the clinical team time to intervene and thus improve outcome and save lives, and models that predict the future course and treatment response in a patient-specific manner.

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Digital oximetry biomarkers for respiratory conditions
Pulse oximetry is routinely used for monitoring patient’s oxygen saturation level non-invasively. A low oxygen level in the blood means low oxygen in the tissues and ultimately this can lead to organ failure. The development of digital oximetry biomarkers (OBM) engineered from the oxygen saturation time series can support diag... more

## Digital oximetry biomarkers for respiratory conditions

Pulse oximetry is routinely used for monitoring patient’s oxygen saturation level non-invasively. A low oxygen level in the blood means low oxygen in the tissues and ultimately this can lead to organ failure. The development of digital oximetry biomarkers (OBM) engineered from the oxygen saturation time series can support diagnosis, characterize subgroups of patients with various disease severity (phenotyping) and enable continuous monitoring of patient’s pulmonary function to predict eventual deteriorations (prognosis). We create new OBM and ML models for the diagnosis of respiratory conditions such as obstructive sleep apnea, chronic obstructive pulmonary disease and pneumonia.

Deep representation learning for cardiovascular diseases
Major cardiovascular and cerebrovascular events occur in individuals without known pre-existing cardiovascular conditions. Preventing such events remains a serious public health challenge. For that purpose, clinical risk scores can be used to identify individuals with high cardiovascular risks. However, available scoring scales ... more

## Deep representation learning for cardiovascular diseases

Major cardiovascular and cerebrovascular events occur in individuals without known pre-existing cardiovascular conditions. Preventing such events remains a serious public health challenge. For that purpose, clinical risk scores can be used to identify individuals with high cardiovascular risks. However, available scoring scales have shown moderate performance. Despite being part of the routine evaluation of many patients in both primary and specialized care, the role of electrocardiogram (ECG) analysis in cardiovascular disease prediction and, hence, prevention is not as clear. We research digital biomarkers and deep representation learning approaches to cardiovascular diseases risk prediction using the ECG.

Distributed Compression of DNA Information
DNA information is rapidly growing in importance, and blowing up in volumes. Most data compressors for DNA have extreme encoding complexities, which is prohibitive for low-cost and portable sequencers. We develop a compression scheme with minimal encoding complexity, taking advantage of the availability of DNA references and com... more

## Distributed Compression of DNA Information

DNA information is rapidly growing in importance, and blowing up in volumes. Most data compressors for DNA have extreme encoding complexities, which is prohibitive for low-cost and portable sequencers. We develop a compression scheme with minimal encoding complexity, taking advantage of the availability of DNA references and computation resources in the cloud.

Distributed Storage and Computation through Coded Sharding
When a distributed storage system is used by decentralized applications (for example: blockchains), accessing individual shards of large data units, new features are needed that are not offered by existing distributed storage systems. In particular, coding the data with standard erasure codes does not allow adequate access perfo... more

## Distributed Storage and Computation through Coded Sharding

When a distributed storage system is used by decentralized applications (for example: blockchains), accessing individual shards of large data units, new features are needed that are not offered by existing distributed storage systems. In particular, coding the data with standard erasure codes does not allow adequate access performance. We develop erasure codes specifically addressing efficient recovery and access in decentralized applications.

Reliability of Machine Learning in Distributed Systems
The common use of AI today is that data is provided to some central computing facility (in the cloud), where the learning tasks (training and inference) are performed. The main issues with this practice are high communication cost and compromised data privacy. Moving part of the learning tasks to the edges mitigates these issues... more

## Reliability of Machine Learning in Distributed Systems

The common use of AI today is that data is provided to some central computing facility (in the cloud), where the learning tasks (training and inference) are performed. The main issues with this practice are high communication cost and compromised data privacy. Moving part of the learning tasks to the edges mitigates these issues. The key question is how to aggregate multiple unreliable outputs from the edge to one reliable learning output, where unreliability is manifested in: missing inputs (stragglers), wrong inputs, and malicious inputs.

Robust economic design
In many economic design settings, strong assumptions are made about the knowledge of the designer. A canonical example from auction design is assuming perfect knowledge of how bidders’ willingness to pay is distributed. In which settings can we achieve designs with similar guarantees as those under full knowledge, despite know... more

## Robust economic design

In many economic design settings, strong assumptions are made about the knowledge of the designer. A canonical example from auction design is assuming perfect knowledge of how bidders’ willingness to pay is distributed. In which settings can we achieve designs with similar guarantees as those under full knowledge, despite knowing only a sample or a first moment of the prior distribution?

Strategic Classification
The goal of this research is to design classifiers robust to strategic behavior of the agents being classified. Here strategic behavior means incurring some cost in order to improve personal features and thus classification. This improvement can be superficial – i.e., gaming the classifier – or substantial, thus leading to t... more

## Strategic Classification

The goal of this research is to design classifiers robust to strategic behavior of the agents being classified. Here strategic behavior means incurring some cost in order to improve personal features and thus classification. This improvement can be superficial – i.e., gaming the classifier – or substantial, thus leading to true self-improvement. In the latter case (and only in this case), the robust classifier should actually encourage strategic behavior.

Constrained Bayesian Persuasion
Consider two strategic players, one more informed about the state of the world and the other less informed. How should the more informed side select what data to communicate to the other side, in order to inspire actions that benefit goals like social welfare? Can this be done under constraints such as privacy, limited communica... more

## Constrained Bayesian Persuasion

Consider two strategic players, one more informed about the state of the world and the other less informed. How should the more informed side select what data to communicate to the other side, in order to inspire actions that benefit goals like social welfare? Can this be done under constraints such as privacy, limited communication, limited attention span, fairness, etc.?

Reproducible and interpretable data-driven feature selection
Design learning and statistical methodologies to effectively identify explanatory features (e.g., genetic variations) truly linked to a phenomenon under study (e.g., disease risk) while rigorously controlling the number of false positives among the reported features.
Certified Robustness of Modern Machine Learning
Develop methodologies that provide provably robust predictions in a challenging setting where the train and test distribution differ, e.g., due to adversarial attacks.
Prediction with confidence
Develop statistical tools that can work in combination with any complex machine learning algorithm (e.g., a deep neural network) to provide a reliable assessment of prediction uncertainty. The tools we invent treat regression, classification, and out-of-distribution detection problems.
Managing Capacity in Deduplicated Storage Systems
Data deduplication is one of the most effective ways to reduce data size in large-scale systems. In a nutshell, duplicate copies of data chunks in different files are replaced with pointers to a single copy of each unique chunk. Optimized deduplication mechanisms facilitated its adoption to online primary storage, introducing ne... more

## Managing Capacity in Deduplicated Storage Systems

Data deduplication is one of the most effective ways to reduce data size in large-scale systems. In a nutshell, duplicate copies of data chunks in different files are replaced with pointers to a single copy of each unique chunk. Optimized deduplication mechanisms facilitated its adoption to online primary storage, introducing new complexities to which traditional solutions do not directly apply. Our objective is to optimize capacity planning, management and load balancing in such systems.

SSD Management with Predictions
The infrastructure for the “big data revolution” is built of systems that support storing, processing, and delivering large amounts of data efficiently. Flash-based solid-state drives (SSDs) are a key component in such systems, thanks to their ability to support parallel I/O at sub-millisecond latency and consistently high t... more

## SSD Management with Predictions

The infrastructure for the “big data revolution” is built of systems that support storing, processing, and delivering large amounts of data efficiently. Flash-based solid-state drives (SSDs) are a key component in such systems, thanks to their ability to support parallel I/O at sub-millisecond latency and consistently high throughput. We develop theoretically-optimal algorithms for the SSD firmware which is responsible for the internal management of data and resources within the storage device.

Online POMDP and BSP Planning via Simplification
We develop a fundamentally novel paradigm that seeks to find a simplification of a given POMDP problem, which is computationally easier, while at the same time providing performance guarantees, and ideally, similar levels of performance as the original decision making problem. Based on this conceptually novel paradigm, we devel... more

## Online POMDP and BSP Planning via Simplification

We develop a fundamentally novel paradigm that seeks to find a simplification of a given POMDP problem, which is computationally easier, while at the same time providing performance guarantees, and ideally, similar levels of performance as the original decision making problem.
Based on this conceptually novel paradigm, we develop approaches that simplify the decision making problem, for example, by resorting to belief simplification or reward function simplification.

Autonomous Semantic Perception under Uncertainty
We develop approaches for autonomous semantic perception addressing key challenges such as: classification aliasing for certain relative viewpoints between object & camera, localization uncertainty, and epistemic uncertainty of the classifier. Specifically, approaches for computationally efficient probabilistic inference and... more

## Autonomous Semantic Perception under Uncertainty

We develop approaches for autonomous semantic perception addressing key challenges such as: classification aliasing for certain relative viewpoints between object & camera, localization uncertainty, and epistemic uncertainty of the classifier. Specifically, approaches for computationally efficient probabilistic inference and decision making, are developed, in the context of semantic perception and SLAM. A key component here is a learned viewpoint-dependent classifier model.

Using the 3D genome to solve the 1D genome
Despite advances in DNA sequencing, full accurate measurement of complex genomes remains a huge challenge. We have discovered that certain 3D structural patterns can be used to solve a range of problems in the field of genome assembly, including the identification of disease mutations that are currently difficult to detect. Usin... more

## Using the 3D genome to solve the 1D genome

Despite advances in DNA sequencing, full accurate measurement of complex genomes remains a huge challenge. We have discovered that certain 3D structural patterns can be used to solve a range of problems in the field of genome assembly, including the identification of disease mutations that are currently difficult to detect. Using machine learning models, we are developing new ways to utilize data from 3D genome measurements to better characterize its 1D sequence in healthy and disease genomes.

Learning 3D genome organization
The 3D organization of genomes is tightly linked to how the genetic information is accessed, regulated and propagated. Using machine learning, with a special emphasis on probabilistic models, we build computational models aimed to gain mechanistic insights of how 3D genome structures are specified and how they change in disease.
Optimal dynamic tolls for managed lanes
A framework for modelling an optimal dynamic toll pricing strategy for a system of managed lanes is developed. A macroscopic traffic simulation model is used to estimate the traffic states subject to initial and boundary conditions while incorporating the tolling policy. Traffic states and optimal toll actions are derived for a ... more

## Optimal dynamic tolls for managed lanes

A framework for modelling an optimal dynamic toll pricing strategy for a system of managed lanes is developed. A macroscopic traffic simulation model is used to estimate the traffic states subject to initial and boundary conditions while incorporating the tolling policy. Traffic states and optimal toll actions are derived for a set of scenarios. These are used with an artificial neural network to develop a tolling policy for toll actions at each step.

Automatic design of actuated traffic signal plans
The aim of this research is to develop a new tool to automatically design complex actuated traffic signal plans. The method uses an automatic programming approach, combined with a mesoscopic traffic simulation model to design and evaluate optimal intersection traffic signal plans. Thus, reducing the need of human intervention in... more

## Automatic design of actuated traffic signal plans

The aim of this research is to develop a new tool to automatically design complex actuated traffic signal plans. The method uses an automatic programming approach, combined with a mesoscopic traffic simulation model to design and evaluate optimal intersection traffic signal plans. Thus, reducing the need of human intervention in the design process. The tool takes into consideration not only the plan parameters but also the control logic as well.

Cross-sectorial collaborations in the new economy
In the new economy, new kinds of organizations emerge. Among others, cross-sectorial collaborations are created, based on the recognition that they benefit all sectors: governmental organizations and local authorities (1st sector), for-profit organizations (2nd sector), and non-governmental non-profit organizations (3rd sector).... more

## Cross-sectorial collaborations in the new economy

In the new economy, new kinds of organizations emerge. Among others, cross-sectorial collaborations are created, based on the recognition that they benefit all sectors: governmental organizations and local authorities (1st sector), for-profit organizations (2nd sector), and non-governmental non-profit organizations (3rd sector). This research, conducted in collaboration with tech-organizations in the context of STEM education, explores benefits that each sector earns from the collaboration.

A new discipline is born: Data science education
Data science is a new interdisciplinary field of research that focuses on extracting knowledge and value from data. As data science is becoming relevant for many scientific, engineering and social research and applications, new data science education programs are being launched and adequate teaching methods are needed for differ... more

## A new discipline is born: Data science education

Data science is a new interdisciplinary field of research that focuses on extracting knowledge and value from data. As data science is becoming relevant for many scientific, engineering and social research and applications, new data science education programs are being launched and adequate teaching methods are needed for different learning populations. This research, conducted by my doctoral student, Koby Mike, explores the essence of this new evolving discipline – data science education.

Human Behavior Prediction with Language-driven Models
Language is a window to the person's mind and soul. Surprisingly, while few would disagree with this statement, most behavior prediction and analysis models do not consider language usage. We develop models that do exactly this, considering both economics setups (where game theory predictions consider only the numerical incentiv... more

## Human Behavior Prediction with Language-driven Models

Language is a window to the person’s mind and soul. Surprisingly, while few would disagree with this statement, most behavior prediction and analysis models do not consider language usage. We develop models that do exactly this, considering both economics setups (where game theory predictions consider only the numerical incentive of the participants) as well as psychological and psychiatric challenges (e.g. predicting suicide risk in the general population based on social media postings). Our goal is to integrate linguistic signals along with other behavioral and medical signals, and provide better prediction capabilities along with improved understanding of the underlying phenomena.

Causal Inference in Natural Language Processing: Model Design and Interpretation
A fundamental problem of machine and deep learning models in NLP is that of spurious correlations. Such heavily parametrized models often capture data-driven patterns that are correlated with their task variables, but these patterns have little connection to the actual task they are trying to perform. This, in turn, substantial... more

## Causal Inference in Natural Language Processing: Model Design and Interpretation

A fundamental problem of machine and deep learning models in NLP is that of spurious correlations. Such heavily parametrized models often capture data-driven patterns that are correlated with their task variables, but these patterns have little connection to the actual task they are trying to perform.
This, in turn, substantially harms their generalization capacity. We hence develop methods that follow the causal inference methodology for improved model generalization, interpretation, and stability.

Domain Adaptation for Natural Language Processing
Domain adaptation is the problem of adapting an algorithm trained on one domain (training distribution) so that it can effectively process data from other domains (e.g. adapting a sentiment classification algorithm trained on book reviews so that it can perform well on reviews of patient experience in clinics).  We consider var... more

## Domain Adaptation for Natural Language Processing

Domain adaptation is the problem of adapting an algorithm trained on one domain (training distribution) so that it can effectively process data from other domains (e.g. adapting a sentiment classification algorithm trained on book reviews so that it can perform well on reviews of patient experience in clinics).  We consider various very challenging setups of domain adaptation, focusing on setups where very limited resources and knowledge of the target domains are available when training the algorithm.

Metastases cause ~90% of cancer mortality and prognosis is currently based on histopathology, disease-statistics, or genetics. Weihs lab developed a rapid (~2hr) early-prognostic of the clinical metastatic risk, adding predictive machine learning models, to support disease management. Two-class and 5-class models successfully s... more

## Mechanobiology-based prediction of metastatic risk

Metastases cause ~90% of cancer mortality and prognosis is currently based on histopathology, disease-statistics, or genetics. Weihs lab developed a rapid (~2hr) early-prognostic of the clinical metastatic risk, adding predictive machine learning models, to support disease management.
Two-class and 5-class models successfully separated invasive/non-invasive or varying invasiveness-level samples with high sensitivity and specificity.

Chebyshev Nets from Commuting PolyVector Fields
In this project, we propose a method for computing global Chebyshev nets on triangular meshes. We formulate the corresponding global parameterization problem in terms of commuting PolyVector fields, and design an efficient optimization method to solve it. We compute, for the first time, Chebyshev nets with automatically-placed s... more

## Chebyshev Nets from Commuting PolyVector Fields

In this project, we propose a method for computing global Chebyshev nets on triangular meshes. We formulate the corresponding global parameterization problem in terms of commuting PolyVector fields, and design an efficient optimization method to solve it. We compute, for the first time, Chebyshev nets with automatically-placed singularities, and demonstrate the realizability of our approach using real material.

Understanding the inheritance of RNA modifications
The first steps of embryogenesis lack transcription and rely on maternal mRNAs stored in oocytes. Thus, maternal mRNA stability is tightly regulated. A-to-I RNA editing is the most common RNA modification, which is important for normal embryonic development and regulation of innate immunity. Using dozens high-throughput sequenci... more

## Understanding the inheritance of RNA modifications

The first steps of embryogenesis lack transcription and rely on maternal mRNAs stored in oocytes. Thus, maternal mRNA stability is tightly regulated. A-to-I RNA editing is the most common RNA modification, which is important for normal embryonic development and regulation of innate immunity. Using dozens high-throughput sequencing databases, we are testing if edited mRNAs are inherited to prevent activation of the immunity system against self RNA in the next generations.

A comprehensive RNA editing site identification
A-to-I RNA editing is the most prevalent type of RNA editing in metazoans. As part of this project, we generated RESIC, an efficient pipeline that combines several approaches for the detection and classification of RNA editing sites. The pipeline can be used for all organisms and can use any number of RNA-sequencing datasets as ... more

## A comprehensive RNA editing site identification

A-to-I RNA editing is the most prevalent type of RNA editing in metazoans. As part of this project, we generated RESIC, an efficient pipeline that combines several approaches for the detection and classification of RNA editing sites. The pipeline can be used for all organisms and can use any number of RNA-sequencing datasets as input. Testing this tool on SARS-CoV-2 infection, our analysis implies the involvement of RNA editing in conceiving the unpredicted phenotype of COVID-19 disease.

Generating a platform for a reliable differential expression analysis
Differential Expression Analysis (DEA) of RNA-sequencing data is frequently performed for detecting key genes, affected across different conditions. Preceding reliability-testing of the input material is crucial for consistent and strong results, yet can be challenging. In this project, we generated a tool: Biological Sequence E... more

## Generating a platform for a reliable differential expression analysis

Differential Expression Analysis (DEA) of RNA-sequencing data is frequently performed for detecting key genes, affected across different conditions. Preceding reliability-testing of the input material is crucial for consistent and strong results, yet can be challenging. In this project, we generated a tool: Biological Sequence Expression Kit (BiSEK) – a UI-based platform for DEA, dedicated to a reliable inquiry.
BiSEK is based on a novel algorithm to track discrepancies between the data and the statistical model design.

memristive Memory Processing Unit (mMPU)
Modern computing systems are limited by the need to move data between the processing units and the memory ("memory wall"). We developed a unit that combines the data processing and storage using the same physical cells using memristive devices. This unit, called mMPU, can execute numerous logical operations simultaneously, offer... more

## memristive Memory Processing Unit (mMPU)

Modern computing systems are limited by the need to move data between the processing units and the memory (“memory wall”). We developed a unit that combines the data processing and storage using the same physical cells using memristive devices. This unit, called mMPU, can execute numerous logical operations simultaneously, offering an energy efficient, high performance machine that is backward compatible with standard computer architectures. The mMPU is especially efficient for applications such as genomics, databases, image processing, DNN and BNN.

Smart Trainable Data Converters
Data converters (analog to digital and digital to analog) are ubiquities in modern electronic devices and connect the real world with digital computing systems. These converters suffer from the speed-accuracy-power tradeoff. We use neuromorphic computing to build data converters that can be trained to adjust to different applica... more

## Smart Trainable Data Converters

Data converters (analog to digital and digital to analog) are ubiquities in modern electronic devices and connect the real world with digital computing systems. These converters suffer from the speed-accuracy-power tradeoff. We use neuromorphic computing to build data converters that can be trained to adjust to different applications and environmental changes and by that achieve a better figure-of-merit compared to standard data converters.

Accelerators for DNN Training
We use emerging memristive technologies to design circuits and systems that accelerate deep neural networks, including their training. Our recent work has shown how to accelerate vanilla gradient descent and gradient descent with momentum using memristors. Our proposed circuits rely on using memristors to both compute and store ... more

## Accelerators for DNN Training

We use emerging memristive technologies to design circuits and systems that accelerate deep neural networks, including their training. Our recent work has shown how to accelerate vanilla gradient descent and gradient descent with momentum using memristors. Our proposed circuits rely on using memristors to both compute and store the weights.

Learning causal estimators from unlabeled data
Models of real-world phenomena, e.g., human physiology, offer significant utility in health and disease. However, they often suffer from misspecification. To understand the implications of such misspecification, we develop some basic theory for the simple setting of linear models, aiming to understand the benefit of the ubiquit... more

## Learning causal estimators from unlabeled data

Models of real-world phenomena, e.g., human physiology, offer significant utility in health and disease.
However, they often suffer from misspecification. To understand the implications of such misspecification, we develop some basic theory for the simple setting of linear models, aiming to understand the benefit of the ubiquitously available unlabelled offline data in enhancing misspecified causal models. We implement these ideas on non-linear models, focusing on the cardiovascular system, where an abundance of unlabelled data and (partial) physiological models are available.

People:
Ron Meir
Curriculum learning agents
The effectiveness of learning systems depends on both the attributes of the learner and the teacher. Indeed, an optimal setup for learning is when the student and teacher/environment operate collaboratively to enhance learning, where the teacher’s task is to develop an appropriate learning curriculum that facilitates learning ... more

## Curriculum learning agents

The effectiveness of learning systems depends on both the attributes of the learner and the teacher. Indeed, an optimal setup for learning is when the student and teacher/environment operate collaboratively to enhance learning, where the teacher’s task is to develop an appropriate learning curriculum that facilitates learning by the student. We develop approaches to enhance agents’ learning within a curriculum setting, focusing on the model-based Reinforcement Learning agents and continuous control settings.

People:
Ron Meir
Lifelong learning agents
Effective learning from data requires prior assumptions, referred to as inductive bias. A fundamental question pertains to the source of a ‘good’ inductive bias. One natural way to form such a bias is through lifelong learning, where an agent continually interacts with the world through a sequence of tasks, aiming to improve... more

## Lifelong learning agents

Effective learning from data requires prior assumptions, referred to as inductive bias. A fundamental question pertains to the source of a ‘good’ inductive bias. One natural way to form such a bias is through lifelong learning, where an agent continually interacts with the world through a sequence of tasks, aiming to improve its performance on future tasks based on the tasks it has encountered so far. We develop a theoretical framework for incremental inductive bias formation, and demonstrate its effectiveness in problems of sequential learning and decision making.

People:
Ron Meir
Randomness for deep neural networks
Preliminary results of this young and exciting project show that we can a. improve the accuracy results of deep neural networks;  b. reduce their size (required accelerator memory) by more than two orders of magnitude while keeping their accuracy intact and c. significantly reduce their depth.
ECG analysis using deep neural networks
We are developing a smartphone app for cardiologists to help analyze ECG charts. Our methods identify dozens of cardio-related conditions: “Automatic classification of healthy and disease conditions from images or digital standard 12-lead ECGs.” Vadim Gliner, Noam Keidar, Vladimir Makarov, Arutyun I. Avetisyan, Assaf Schuste... more

## ECG analysis using deep neural networks

We are developing a smartphone app for cardiologists to help analyze ECG charts. Our methods identify dozens of cardio-related conditions: “Automatic classification of healthy and disease conditions from images or digital standard 12-lead ECGs.” Vadim Gliner, Noam Keidar, Vladimir Makarov, Arutyun I. Avetisyan, Assaf Schuster and Yael Yaniv. Scientific Reports. September 2020. We develop tools to assist physicians use AI tools: “Meeting the unmet needs of clinicians from AI systems in cardiology: A systematic formulation, and a suggested framework.” Yonatan Elul, Aviv Rosenberg, Assaf Schuster, Alex Bronstein, Yael Yaniv. Proceedings of the National Academy of Sciences of the United States of America (PNAS). April 2021.  We are working on predicting cardiovascular events.

Asynchronous Distributed Training of Deep Neural Networks
We developed asynchronous versions of data parallel training and showed them to be faster than their synchronous counterparts : “Taming Momentum in a Distributed Asynchronous Environment.” Ido Hakimi, Saar Barkai, Moshe Gabel, Assaf Schuster. Aug 2019, arXiv. We also solved the issue associated with asynchrony, named “stal... more

## Asynchronous Distributed Training of Deep Neural Networks

We developed asynchronous versions of data parallel training and showed them to be faster than their synchronous counterparts : “Taming Momentum in a Distributed Asynchronous Environment.” Ido Hakimi, Saar Barkai, Moshe Gabel, Assaf Schuster. Aug 2019, arXiv. We also solved the issue associated with asynchrony, named “staleness”: “Gap-Aware Mitigation of Gradient Staleness.” Saar Barkai, Ido Hakimi, Assaf Schuster. ICLR 2020. We developed model parallel approach for fine tuning of giant deep models on commodity hardware (submitted for publication).

Dimensionality reduction
In this setting we study how to reduce the dimensionality of data for learning and for optimization, avoiding the “curse of dimensionality”.
People:
Nir Ailon
Ranking and preference learning
In this setting we study how to model people’s preferences over a set of choices, and how to optimize and learn given user preferences in a variety of applications.
People:
Nir Ailon
Online and bandit optimization
In this project we study how to make decisions in an unknown environment in an online setting.
People:
Nir Ailon
Large matrix approximation for acceleration of deep networks
In this work we apply matrix approximation theory to reduce the cost of training and deploying of dense layers in deep networks.
People:
Nir Ailon